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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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DDX56
DEAD-box helicase 56
Chromosome 7 · 7p13
NCBI Gene: 54606Ensembl: ENSG00000136271.12HGNC: HGNC:18193UniProt: Q9NY93
130PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
host-mediated perturbation of viral RNA genome replicationnegative regulation of type I interferon productiondefense response to virusnucleusmetabolic diseasehyperlipidemiaadolescent idiopathic scoliosisresponse to statin
✦AI Summary

DDX56 is a DEAD-box RNA helicase with dual and opposing roles in viral infections and cancer. In viral pathogenesis, DDX56 functions as a proviral host factor that enhances replication of multiple RNA viruses. DDX56 interacts with influenza A virus NS1 protein to promote viral replication 1, cooperates with foot-and-mouth disease virus 3A protein to inhibit IRF3 phosphorylation and suppress type I interferon production 2, and antagonizes IFN-β production during encephalomyocarditis virus infection by blocking IRF3 nuclear translocation 3. Notably, DDX56 also demonstrates antiviral properties against alphaviruses like chikungunya virus, where it relocates to the cytoplasm and binds viral genomic RNA stem-loops to destabilize incoming viral genomes 4. As an RNA helicase, DDX56 plays context-dependent roles in intrinsic and innate immunity 5. In oncogenic contexts, DDX56 is significantly upregulated in multiple cancers. In hepatocellular carcinoma, DDX56 transcriptionally activates MIST1 through histone methylation to promote proliferation via PTEN-AKT pathway dysregulation 6. In lung adenocarcinoma, DDX56 reduces apoptosis and carboplatin sensitivity by promoting Bcl-2 transcription and activating NF-κB signaling 7. In colorectal cancer, DDX56 amplification promotes oncogenic alternative splicing and cell cycle progression by downregulating WEE1 8. High DDX56 expression correlates with poor prognosis and metastasis across multiple cancers, identifying it as a potential therapeutic target.

Sources cited
1
DDX56 interacts with influenza A virus NS1 protein and stimulates viral replication
PMID: 33749700
2
DDX56 cooperates with FMDV 3A protein to inhibit IRF3 phosphorylation and promote FMDV replication
PMID: 31445188
3
DDX56 antagonizes IFN-β production by blocking IRF3 nuclear translocation during EMCV infection
PMID: 34922148
4
DDX56 binds chikungunya virus genomic RNA stem-loops in cytoplasm to destabilize incoming viral genomes
PMID: 33109765
5
DDX56 constitutively restricts viral replication as part of intrinsic and innate antiviral immunity
PMID: 36006669
6
DDX56 transcriptionally activates MIST1 through MECOM-mediated H3K9me1 methylation to promote HCC proliferation via PTEN-AKT pathway
PMID: 36168636
7
DDX56 reduces apoptosis and carboplatin sensitivity in LUAD by promoting Bcl-2 transcription and activating NF-κB signaling
PMID: 40670701
8
DDX56 amplification in colorectal cancer promotes oncogenic splicing of WEE1 and cell cycle progression, correlating with poor prognosis
PMID: 31390121
Disease Associationsⓘ20
metabolic diseaseOpen Targets
0.29Weak
hyperlipidemiaOpen Targets
0.29Weak
adolescent idiopathic scoliosisOpen Targets
0.26Weak
response to statinOpen Targets
0.22Weak
HypercholesterolemiaOpen Targets
0.22Weak
alcohol drinkingOpen Targets
0.20Weak
smoking initiationOpen Targets
0.20Weak
physical activityOpen Targets
0.16Weak
neurodegenerative diseaseOpen Targets
0.16Weak
Abnormality of the skeletal systemOpen Targets
0.10Suggestive
hepatocellular carcinomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
Autosomal dominant primary hypomagnesemia with hypocalciuriaOpen Targets
0.06Suggestive
familial primary hypomagnesemia with normocalciuria and normocalcemiaOpen Targets
0.06Suggestive
ovarian dysfunctionOpen Targets
0.06Suggestive
lung adenocarcinomaOpen Targets
0.05Suggestive
intestinal hypomagnesemia 1Open Targets
0.05Suggestive
Primary hypomagnesemia with secondary hypocalcemiaOpen Targets
0.05Suggestive
cancerOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RRP9Protein interaction100%NOP58Protein interaction100%WDR36Protein interaction100%TBL3Protein interaction100%WDR46Protein interaction100%DHX36Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Ovary
98%
Bone Marrow
85%
Lung
78%
Heart
51%
Brain
38%
Gene Interaction Network
Click a node to explore
DDX56RRP9NOP58WDR36TBL3WDR46DHX36
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9NY93
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.91LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.71 [0.56–0.91]
RankingsWhere DDX56 stands among ~20K protein-coding genes
  • #3,588of 20,598
    Most Researched130 · top quartile
  • #8,199of 17,882
    Most Constrained (LOEUF)0.91
Genes detectedDDX56
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
DDX56 transcriptionally activates MIST1 to facilitate tumorigenesis of HCC through PTEN-AKT signaling.
PMID: 36168636
Theranostics · 2022
1.00
2
Human DDX56 protein interacts with influenza A virus NS1 protein and stimulates the virus replication.
PMID: 33749700
Genet Mol Biol · 2021
0.90
3
Identifying the crucial oncogenic mechanisms of DDX56 based on a machine learning-based integration model of RNA-binding proteins.
PMID: 40670701
NPJ Precis Oncol · 2025
0.80
4
Oncogenic splicing abnormalities induced by DEAD-Box Helicase 56 amplification in colorectal cancer.
PMID: 31390121
Cancer Sci · 2019
0.70
5
DExH/D-box helicases at the frontline of intrinsic and innate immunity against viral infections.
PMID: 36006669
J Gen Virol · 2022
0.60