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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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DEFA6
defensin alpha 6
Chromosome 8 · 8p23.1
NCBI Gene: 1671Ensembl: ENSG00000164822.5HGNC: HGNC:2765UniProt: Q01524
44PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingprotein homodimerization activityantibacterial humoral responseinnate immune response
✦AI Summary

DEFA6 (defensin alpha 6) is an antimicrobial peptide produced by intestinal Paneth cells that functions as a key component of innate immunity at mucosal surfaces 1. The protein forms higher-order oligomers and fibril-like nanonets that capture and entangle both Gram-negative bacteria (E. coli, Salmonella typhimurium) and Gram-positive bacteria (Listeria monocytogenes), preventing bacterial invasion across the epithelial barrier 1. Under reducing conditions mimicking the intestinal environment, DEFA6 exhibits antimicrobial activity against anaerobic bacteria, though its oxidized disulfide-linked form shows negligible activity 1. In inflammatory bowel disease, particularly Crohn's disease affecting the small intestine, DEFA6 expression is specifically reduced, compromising bacterial clearance and contributing to disease pathogenesis 12. Loss of PTPN2 function reduces ileal DEFA6 and DEFA5 expression, increasing susceptibility to adherent-invasive E. coli colonization 3. Lower DEFA6 expression correlates with increased necrotizing enterocolitis risk in neonates 4. In colorectal cancer, DEFA6 expression is elevated and associated with poor prognosis, suggesting dual roles in barrier immunity and oncogenic processes 56. DEFA6 is recognized as a machine-learning-identified biomarker for inflammatory bowel disease diagnosis 7.

Sources cited
1
DEFA6 is produced by Paneth cells, forms nanonets to entangle bacteria, and is specifically reduced in small intestinal Crohn's disease
PMID: 21122555
2
DEFA6 expression levels are quantified in ileal mucosa of Crohn's disease patients and analyzed in relation to disease duration
PMID: 38319717
3
Loss of PTPN2 reduces ileal DEFA5 and DEFA6 expression, increasing susceptibility to pathobiont infection
PMID: 40955058
4
Lower DEFA6 expression in intestinal tissue correlates with necrotizing enterocolitis risk and serves as a tissue biomarker
PMID: 37017768
5
DEFA6 expression is significantly increased in colorectal cancer tissues and associated with poor prognosis
PMID: 36703795
6
DEFA6 is highly expressed in colorectal cancer cell lines and patient samples, promotes cancer cell proliferation and invasion, and serves as an independent prognostic marker
PMID: 30932884
7
DEFA6 is identified as a crucial biomarker for inflammatory bowel disease through machine learning analysis and associated with immune system modulation
PMID: 40830794
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
REG1BProtein interaction98%REG3AProtein interaction94%DEFB4AProtein interaction78%REG1AProtein interaction76%DEFA4Shared pathway70%DEFA3Shared pathway70%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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DEFA6REG1BREG3ADEFB4AREG1ADEFA4DEFA3
PROTEIN STRUCTURE
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PDB3QTE · 1.95 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.91LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.33 [0.65–1.91]
RankingsWhere DEFA6 stands among ~20K protein-coding genes
  • #9,581of 20,598
    Most Researched44
  • #17,328of 17,882
    Most Constrained (LOEUF)1.91
Genes detectedDEFA6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Protective Role of Spermidine in Colitis and Colon Carcinogenesis.
PMID: 34767785
Gastroenterology · 2022
1.00
2
Construction of a feature gene and machine prediction model for inflammatory bowel disease based on multichip joint analysis.
PMID: 40830794
J Transl Med · 2025
0.90
3
Paneth's disease.
PMID: 21122555
J Crohns Colitis · 2010
0.80
4
Intestinal epithelial PTPN2 limits pathobiont colonization by immune-directed antimicrobial responses.
PMID: 40955058
Gut Microbes · 2025
0.70
5
Paneth cell proteins DEFA6 and GUCA2A as tissue markers in necrotizing enterocolitis.
PMID: 37017768
Eur J Pediatr · 2023
0.60