HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
DEPP1
DEPP autophagy regulator 1
Chromosome 10 · 10q11.21
NCBI Gene: 11067Ensembl: ENSG00000165507.10HGNC: HGNC:23355UniProt: Q9NTK1
28PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
regulation of autophagymitochondrioncytoplasmperoxisomeneuroblastomagastric cancerbreast cancerneoplasm
✦AI Summary

DEPP1 (DEPP autophagy regulator 1) is a mitochondrial protein that functions as a critical modulator of autophagy and cellular stress responses. Mechanistically, DEPP1 activates mitochondrial autophagy via FOXO3-dependent pathways and BCL2 interacting protein 3, operating through increased cellular ROS to promote autophagic flux 1. Under stress conditions including hypoxia, oxidative stress, and starvation, DEPP1 expression is induced in a HIF-dependent manner and localizes to mitochondria where it regulates selective autophagy of damaged organelles 21. DEPP1 has emerged as a pathologically relevant gene across multiple diseases. In ischemic cardiomyopathy, HIF-induced DEPP1 mediates mitochondrial loss, lipid accumulation, and cardiac dysfunction; DEPP1 loss improves cardiomyocyte survival and reduces cardiac remodeling 2. In gastric cancer, elevated DEPP1 expression associates with poor prognosis, stroma-rich immunosuppressive microenvironments, and chemotherapy resistance 3. DEPP1 is upregulated in fast/glycolytic muscle fibers during aging and obesity, contributing to muscle atrophy through inflammatory pathways 4. Additionally, DEPP1 serves as a FOXO1-target gene induced during starvation-induced muscle atrophy 5, and appears elevated in pathological vascular smooth muscle proliferation and glioma progression 67. In osteoarthritis, DEPP1 loss exacerbates cartilage degradation by impairing mitochondrial autophagy 1. DEPP1 represents a potential therapeutic target for diseases involving autophagic dysfunction.

Sources cited
1
HIF induces DEPP1 which localizes in mitochondria and is necessary and sufficient for hypoxia-induced autophagy and triglyceride accumulation in cardiomyocytes; DEPP1 loss improves cardiac function in chronic HIF activation
PMID: 38881449
2
DEPP1 activates mitochondrial autophagy via BCL2 interacting protein 3, is FOXO3-regulated, maintains chondrocyte viability during oxidative stress, and DEPP1-knockout mice show exacerbated cartilage degradation in osteoarthritis
PMID: 34997944
3
DEPP1 is specifically increased in fast/glycolytic muscle fibers during aging and obesity, associated with muscle atrophy and inflammation
PMID: 38942747
4
DEPP1 is upregulated in gastric cancer, correlates with poor prognosis, stroma-rich immunosuppressive microenvironment, and promotes oxaliplatin resistance
PMID: 40376989
5
DEPP1 is a FOXO1-target gene induced during starvation that contributes to skeletal muscle atrophy
PMID: 35061305
6
DEPP1 expression is upregulated in pathologic vascular smooth muscle cell proliferation associated with thoracic aortic aneurysm
PMID: 41021763
7
DEPP1 is included in a prognostic risk score model for glioma with significance in tumor-associated immune responses
PMID: 40052358
8
DEPP1 is identified as a signature gene in high TWAS-activity endothelial cells associated with pulmonary arterial hypertension pathogenesis
PMID: 41065575
Disease Associationsⓘ20
neuroblastomaOpen Targets
0.09Suggestive
gastric cancerOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.06Suggestive
gliomaOpen Targets
0.06Suggestive
Abruptio PlacentaeOpen Targets
0.05Suggestive
psoriatic arthritisOpen Targets
0.04Suggestive
renal cell carcinomaOpen Targets
0.04Suggestive
clear cell renal carcinomaOpen Targets
0.04Suggestive
prostate carcinomaOpen Targets
0.03Suggestive
cancerOpen Targets
0.03Suggestive
abscessOpen Targets
0.03Suggestive
cellulitisOpen Targets
0.02Suggestive
HydrocephalusOpen Targets
0.02Suggestive
malignant renal pelvis neoplasmOpen Targets
0.02Suggestive
frozen shoulderOpen Targets
0.02Suggestive
osteoarthritisOpen Targets
0.02Suggestive
autismOpen Targets
0.02Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
depressive disorderOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MTCL3Shared pathway100%DRAM1Shared pathway100%RMC1Shared pathway100%CRNNProtein interaction95%RPTNProtein interaction94%CISD2Shared pathway50%
Tissue Expression6 tissues
Lung
100%
Ovary
72%
Liver
37%
Heart
20%
Brain
14%
Bone Marrow
3%
Gene Interaction Network
Click a node to explore
DEPP1MTCL3DRAM1RMC1CRNNRPTNCISD2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9NTK1
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.77LoF Tolerant
pLIⓘ
0.38Tolerant
Observed/Expected LoF0.00 [0.00–1.77]
RankingsWhere DEPP1 stands among ~20K protein-coding genes
  • #12,336of 20,598
    Most Researched28
  • #16,447of 17,882
    Most Constrained (LOEUF)1.77
Genes detectedDEPP1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Induction of DEPP1 by HIF Mediates Multiple Hallmarks of Ischemic Cardiomyopathy.
PMID: 38881449
Circulation · 2024
1.00
2
Multi-omics dissection of high TWAS-active endothelial pathogenesis in pulmonary arterial hypertension: bridging single-cell heterogeneity, machine learning-driven biomarkers, and developmental reprogramming.
PMID: 41065575
Int J Surg · 2026
0.90
3
Transcriptome profiling of fast/glycolytic and slow/oxidative muscle fibers in aging and obesity.
PMID: 38942747
Cell Death Dis · 2024
0.80
4
DEPP1: A prognostic biomarker linked to stroma‑rich and immunosuppressive microenvironment, promoting oxaliplatin resistance in gastric cancer.
PMID: 40376989
Oncol Rep · 2025
0.70
5
Integrated Analysis to Reveal Heterogeneity of Tumor-Associated Neutrophils in Glioma.
PMID: 40052358
Cancer Med · 2025
0.60