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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CRNN
cornulin
Chromosome 1 · 1q21.3
NCBI Gene: 49860Ensembl: ENSG00000143536.7HGNC: HGNC:1230UniProt: Q9UBG3
43PubMed Papers
21Diseases
0Drugs
0Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cell-cell adhesioncytoplasmmembraneprotein bindingesophageal canceratopic eczemaesophageal squamous cell carcinomadermatitis
✦AI Summary

CRNN (cornulin) is a 495 amino acid protein located on chromosome 1.3 that functions primarily as a differentiation marker in squamous epithelial cells 1. CRNN promotes cell proliferation and G1/S cell cycle progression by inducing CCND1 expression and activating NFKB1 and PI3K/AKT signaling pathways 2. In normal physiology, CRNN serves as a stress response regulator with roles in keratinocyte differentiation and cell-cell adhesion. CRNN functions as a tumor suppressor in multiple squamous cell carcinomas. In esophageal squamous cell carcinoma (ESCC), CRNN expression significantly decreases during progression from precancerous lesions to invasive cancer, with reduced CRNN inhibiting cell proliferation 3. Similarly, CRNN downregulation occurs in oral 4, laryngeal 5, and cutaneous squamous cell carcinomas 6. CRNN downregulation correlates with genomic instability, microsatellite instability, and loss of heterozygosity at 1q21.3 4. CRNN overexpression suppresses tumor cell growth, migration, invasion, and promotes cell death, while CRNN knockdown reverses these effects via AKT pathway inhibition 56. CRNN downregulation is independently associated with poor prognosis and advanced staging across multiple cancer types, establishing it as a potential prognostic and therapeutic target 45.

Sources cited
1
CRNN promotes cell proliferation, G1/S progression, induces CCND1, and activates NFKB1 and PI3K/AKT pathways
PMID: 30009832
2
CRNN is a 495 amino acid protein on chromosome 1q21.3; functions as differentiation marker and stress response regulator; downregulated in squamous cell carcinomas with poor prognosis
PMID: 34969781
3
CRNN expression decreases during ESCC progression; CRNN inhibits cell proliferation and cancer progression
PMID: 37553345
4
CRNN downregulation in oral squamous cell carcinoma associated with microsatellite instability and loss of heterozygosity at 1q21.3; LOH is independent prognostic marker; downregulation associated with poor prognosis
PMID: 25846277
5
CRNN downregulated in laryngeal squamous cell carcinoma; CRNN overexpression inhibits cell growth, cycle progression, migration, invasion; CRNN knockdown promotes these malignant features; suppresses tumor growth in vivo
PMID: 38538265
6
CRNN promotes cutaneous squamous cell carcinoma progression via AKT activation; CRNN reduction halts G1/S transition and inhibits cell growth and migration; CRNN overexpression enhances growth and prevents apoptosis
PMID: 39292704
Disease Associationsⓘ21
esophageal cancerOpen Targets
0.46Moderate
atopic eczemaOpen Targets
0.19Weak
esophageal squamous cell carcinomaOpen Targets
0.10Weak
dermatitisOpen Targets
0.09Suggestive
dermatophytosisOpen Targets
0.08Suggestive
Eczematoid dermatitisOpen Targets
0.08Suggestive
dermatomycosisOpen Targets
0.06Suggestive
oral squamous cell carcinomaOpen Targets
0.06Suggestive
neoplasmOpen Targets
0.05Suggestive
WheezingOpen Targets
0.04Suggestive
colorectal adenocarcinomaOpen Targets
0.04Suggestive
skin squamous cell carcinomaOpen Targets
0.03Suggestive
cancerOpen Targets
0.03Suggestive
childhood onset asthmaOpen Targets
0.03Suggestive
Decreased total leukocyte countOpen Targets
0.03Suggestive
systemic sclerodermaOpen Targets
0.03Suggestive
atopic marchOpen Targets
0.02Suggestive
head and neck squamous cell carcinomaOpen Targets
0.02Suggestive
esophageal adenocarcinomaOpen Targets
0.02Suggestive
breast carcinomaOpen Targets
0.02Suggestive
Esophageal cancerUniProt
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DEPP1Protein interaction95%TMPRSS11BProtein interaction86%KRT78Protein interaction76%CRCT1Protein interaction75%TGM3Protein interaction74%SPRR3Protein interaction72%
Tissue Expression6 tissues
Liver
100%
Ovary
58%
Lung
22%
Brain
0%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CRNNDEPP1TMPRSS11BKRT78CRCT1TGM3SPRR3
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9UBG3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.11LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.85 [0.66–1.11]
RankingsWhere CRNN stands among ~20K protein-coding genes
  • #9,713of 20,598
    Most Researched43
  • #11,396of 17,882
    Most Constrained (LOEUF)1.11
Genes detectedCRNN
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Spatial transcriptomics analysis of esophageal squamous precancerous lesions and their progression to esophageal cancer.
PMID: 37553345
Nat Commun · 2023
1.00
2
Downregulation of CRNN gene and genomic instability at 1q21.3 in oral squamous cell carcinoma.
PMID: 25846277
Clin Oral Investig · 2015
0.90
3
Identification of Down-Expressed CRNN Associated with Cancer Progression and Poor Prognosis in Laryngeal Squamous Cell Carcinoma.
PMID: 38538265
Front Biosci (Landmark Ed) · 2024
0.80
4
Gene of the month: Cornulin.
PMID: 34969781
J Clin Pathol · 2022
0.70
5
The role of cornulin (CRNN) in the progression of cutaneous squamous cell carcinoma involving AKT activation in SCL-1.
PMID: 39292704
PLoS One · 2024
0.60