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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CRCT1
cysteine rich C-terminal 1
Chromosome 1 · 1q21.3
NCBI Gene: 54544Ensembl: ENSG00000169509.6HGNC: HGNC:29875UniProt: Q9UGL9
17PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingatopic eczemaWheezingdermatophytosisallergic rhinitis
✦AI Summary

CRCT1 (cysteine-rich C-terminal 1) is a tumor suppressor gene encoded by the epidermal differentiation complex that regulates cell proliferation and apoptosis across multiple cancer types. In esophageal squamous cell cancer (ESCC), CRCT1 is downregulated in association with TNM stage and lymph node metastasis; restoring CRCT1 expression inhibits cell proliferation, suppresses xenograft tumor formation, and promotes apoptosis through upregulation of apoptosis-related proteins 1. CRCT1 functions as a direct target of microRNA-520g, which inversely correlates with CRCT1 levels in ESCC tissues 1. Beyond ESCC, CRCT1 shows altered expression in HPV-positive oropharyngeal squamous cell carcinomas 2 and is downregulated in cervical cancer 3. Notably, CRCT1 demonstrates significant clinical diagnostic potential as a salivary extracellular RNA biomarker for gingivitis, achieving 71% sensitivity and 100% specificity when included in a four-marker panel (SPRR1A, lnc-TET3-2:1, FAM25A, CRCT1) 4. CRCT1 is also differentially expressed in periodontal ligament tissues during vertical tooth movement 5. Additionally, CRCT1 has been identified in a novel melanocytic tumor fusion event (CRCT1::TRIM11) 6. These findings position CRCT1 as a multi-functional tumor suppressor with potential applications in cancer diagnosis, prognosis, and therapeutic development.

Sources cited
1
CRCT1 is downregulated in ESCC, inhibits proliferation and xenograft formation, promotes apoptosis, and is regulated by miR-520g
PMID: 26718216
2
CRCT1 shows altered expression in HPV-positive oropharyngeal squamous cell carcinomas
PMID: 26334652
3
CRCT1 is downregulated in cervical cancer and associated with cancer progression
PMID: 41516135
4
CRCT1 is a salivary exRNA biomarker for gingivitis with 71% sensitivity and 100% specificity in a four-marker panel
PMID: 29779262
5
CRCT1 is among four exRNA biomarkers displaying >71% sensitivity and 100% specificity for gingivitis detection
PMID: 35453967
6
CRCT1 shows >100-fold higher expression in periodontal ligaments of teeth with occlusal contact versus vertically moving teeth
PMID: 18199074
7
CRCT1 is involved in a novel CRCT1::TRIM11 fusion in melanocytoma
PMID: 34958499
8
CRCT1 shows low expression in oropharyngeal carcinoma with protein binding correlation
PMID: 37917867
Disease Associationsⓘ20
atopic eczemaOpen Targets
0.14Weak
WheezingOpen Targets
0.10Weak
dermatophytosisOpen Targets
0.10Weak
allergic rhinitisOpen Targets
0.09Suggestive
asthmaOpen Targets
0.08Suggestive
dermatomycosisOpen Targets
0.08Suggestive
Eczematoid dermatitisOpen Targets
0.08Suggestive
androgenetic alopeciaOpen Targets
0.07Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
childhood onset asthmaOpen Targets
0.07Suggestive
dermatitisOpen Targets
0.07Suggestive
atopic marchOpen Targets
0.06Suggestive
esophageal adenocarcinomaOpen Targets
0.05Suggestive
Abnormality of the skeletal systemOpen Targets
0.05Suggestive
breast cancerOpen Targets
0.05Suggestive
esophageal squamous cell carcinomaOpen Targets
0.04Suggestive
tinea pedisOpen Targets
0.03Suggestive
primary biliary cirrhosisOpen Targets
0.03Suggestive
oral squamous cell carcinomaOpen Targets
0.02Suggestive
psoriasisOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FAM25ACo-mentioned in literature100%LCE3DProtein interaction87%SPRR1AProtein interaction75%CRNNProtein interaction75%
Tissue Expression6 tissues
Liver
100%
Ovary
57%
Lung
29%
Brain
0%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
CRCT1FAM25ALCE3DSPRR1ACRNN
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9UGL9
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.90LoF Tolerant
pLIⓘ
0.15Tolerant
Observed/Expected LoF1.07 [0.27–1.90]
RankingsWhere CRCT1 stands among ~20K protein-coding genes
  • #14,964of 20,598
    Most Researched17
  • #17,260of 17,882
    Most Constrained (LOEUF)1.90
Genes detectedCRCT1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Deregulation of SYCP2 predicts early stage human papillomavirus-positive oropharyngeal carcinoma: A prospective whole transcriptome analysis.
PMID: 26334652
Cancer Sci · 2015
1.00
2
CRCT1 regulated by microRNA-520 g inhibits proliferation and induces apoptosis in esophageal squamous cell cancer.
PMID: 26718216
Tumour Biol · 2016
0.90
3
The Role of Epigenetic and Biological Biomarkers in the Diagnosis of Periodontal Disease: A Systematic Review Approach.
PMID: 35453967
Diagnostics (Basel) · 2022
0.80
4
Differentially Expressed Genes Associated with the Development of Cervical Cancer.
PMID: 41516135
Int J Mol Sci · 2025
0.70
5
Salivary exRNA biomarkers to detect gingivitis and monitor disease regression.
PMID: 29779262
J Clin Periodontol · 2018
0.60