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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LCE3D
late cornified envelope 3D
Chromosome 1 · 1q21.3
NCBI Gene: 84648Ensembl: ENSG00000163202.5HGNC: HGNC:16615UniProt: Q9BYE3
15PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingcytosolepidermis developmentpsoriasispsoriasis vulgarisAlzheimer diseaseulcerative colitis
✦AI Summary

LCE3D (late cornified envelope 3D) is a structural protein component of the cornified envelope in the stratum corneum, serving as a precursor for skin barrier formation 1. The gene functions in keratinocyte differentiation and plays a role in maintaining epidermal integrity. LCE3D is recognized as a psoriasis susceptibility locus identified through genome-wide association studies across multiple ethnic populations 23. A specific polymorphism (rs4085613) in LCE3D is associated with treatment response to brodalumab therapy in plaque psoriasis, with certain genotypes conferring reduced probability of achieving optimal clinical response 4. The gene has been identified as a candidate biomarker for predicting psoriasis disease severity 5. Beyond psoriasis, LCE3D expression is upregulated following solar protection and repair strategies in reconstructed human skin models, suggesting involvement in photoprotection and UV-damage repair mechanisms 1. Recent transcriptome-wide association studies identified LCE3D as a hub gene orchestrating keratinization pathways in atopic dermatitis, positioning it as a potential drug target 6. The gene also shows altered expression in head and neck squamous cell carcinoma 7. These findings collectively indicate LCE3D's importance in skin barrier function, disease susceptibility, and potential therapeutic targeting across multiple dermatological and malignant conditions.

Sources cited
1
LCE3D is a replicated psoriasis susceptibility locus identified in whole-exome association study
PMID: 25854761
2
LCE3D is recognized as a psoriasis susceptibility gene in subjects of Chinese ethnicity
PMID: 22274791
3
LCE3D expression is upregulated following solar protection and repair strategies in 3D reconstructed human skin
PMID: 37850108
4
LCE3D is identified as a candidate biomarker for predicting psoriasis disease severity
PMID: 35482474
5
LCE3D polymorphism (rs4085613) is associated with brodalumab treatment response in psoriasis
PMID: 40246146
6
LCE3D is a hub gene orchestrating keratinization pathways in atopic dermatitis transcriptome
PMID: 40017037
7
LCE3D shows significant upregulation in head and neck squamous cell carcinoma
PMID: 25007175
Disease Associationsⓘ20
psoriasisOpen Targets
0.22Weak
psoriasis vulgarisOpen Targets
0.18Weak
Alzheimer diseaseOpen Targets
0.08Suggestive
Crohn's diseaseOpen Targets
0.07Suggestive
ulcerative colitisOpen Targets
0.07Suggestive
type 2 diabetes mellitusOpen Targets
0.07Suggestive
ankylosing spondylitisOpen Targets
0.05Suggestive
sclerosing cholangitisOpen Targets
0.05Suggestive
esophageal adenocarcinomaOpen Targets
0.04Suggestive
atopic eczemaOpen Targets
0.02Suggestive
skin diseaseOpen Targets
0.02Suggestive
rosaceaOpen Targets
0.02Suggestive
dysplasiaOpen Targets
0.02Suggestive
acneOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
Down syndromeOpen Targets
0.01Suggestive
bladder transitional cell carcinomaOpen Targets
0.00Suggestive
prostate cancerOpen Targets
0.00Suggestive
thanatophoric dysplasiaOpen Targets
0.00Suggestive
triple-negative breast cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LCE7AShared pathway100%KPLCEShared pathway100%KRTDAPShared pathway100%LCE1EProtein interaction100%LCE1AProtein interaction99%LCE1FProtein interaction99%
Tissue Expression6 tissues
Lung
0%
Ovary
0%
Bone Marrow
0%
Heart
0%
Liver
0%
Brain
0%
Gene Interaction Network
Click a node to explore
LCE3DLCE7AKPLCEKRTDAPLCE1ELCE1ALCE1F
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9BYE3
View on AlphaFold ↗
RankingsWhere LCE3D stands among ~20K protein-coding genes
  • #15,609of 20,598
    Most Researched15
Genes detectedLCE3D
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.
PMID: 25854761
Nat Commun · 2015
1.00
2
Up-Regulated Expression of ICAM1, MT1A, PTGS2, LCE3D, PPARD, and GM-CSF2 Following Solar Skincare Protection and Repair Strategies in a 3-Dimensional Reconstructed Human Skin Model.
PMID: 37850108
Clin Cosmet Investig Dermatol · 2023
0.90
3
Biomarkers of disease progression in people with psoriasis: a scoping review.
PMID: 35482474
Br J Dermatol · 2022
0.80
4
An analysis of the prognostic role of reactive oxygen species-associated genes in breast cancer.
PMID: 38319140
Environ Toxicol · 2024
0.70
5
Transcriptome-wide analyses delineate the genetic architecture of expression variation in atopic dermatitis.
PMID: 40017037
HGG Adv · 2025
0.60