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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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DHX16
DEAH-box helicase 16
Chromosome 6 Β· 6p21.33
NCBI Gene: 8449Ensembl: ENSG00000204560.10HGNC: HGNC:2739UniProt: A0A1U9X7L7
112PubMed Papers
1Diseases
0Drugs
7Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nucleusspliceosomal complexU2-type precatalytic spliceosomemRNA splicing, via spliceosomeNeuromuscular oculoauditory syndrome
✦AI Summary

DHX16 (DEAH-box helicase 16) is an essential RNA helicase that functions in two critical cellular processes: pre-mRNA splicing and innate antiviral immunity. As a core spliceosomal component, DHX16 is required for pre-mRNA splicing after spliceosome formation but prior to the first transesterification reaction 12. The protein catalyzes ATP-dependent remodeling during the transition from activated Bact to branching-competent B* spliceosomes, translocating along introns while stripping away the RES complex and opening the SF3B1 clamp 3. DHX16 also serves as a pattern recognition receptor in antiviral immunity, recognizing specific viral RNA signals that undergo splicing and partnering with RIG-I to amplify innate immune responses through unanchored K48-polyubiquitin chains synthesized by TRIM6 4. Pathogenic variants in DHX16 cause neuromuscular oculoauditory syndrome, characterized by neuromuscular disease, sensorineural hearing loss, retinal abnormalities, and developmental delays 567. Functional studies demonstrate that DHX16 mutations lead to nuclear retention of unspliced pre-mRNAs and impaired spliceosome function 2. The expanding phenotypic spectrum includes mitochondrial deficiency and primary ovarian insufficiency, highlighting DHX16's broader cellular importance 7.

Sources cited
1
DHX16 is required for pre-mRNA splicing after spliceosome formation
PMID: 20423332
2
DHX16 functions prior to first transesterification reaction and mutations cause nuclear retention of unspliced RNAs
PMID: 20841358
3
DHX16 catalyzes ATP-dependent remodeling during spliceosome activation by translocating along introns
PMID: 37165190
4
DHX16 acts as pattern recognition receptor recognizing viral RNA and partnering with RIG-I in antiviral immunity
PMID: 35263596
5
Pathogenic DHX16 variants cause neuromuscular oculoauditory syndrome with characteristic clinical features
PMID: 40141454
6
DHX16 variants associated with encephalomyopathy, retinopathy, and hearing loss
PMID: 37574199
7
Expanding phenotype includes mitochondrial deficiency and primary ovarian insufficiency
PMID: 37664979
Disease Associationsβ“˜1
Neuromuscular oculoauditory syndromeUniProt
Pathogenic Variants7
NM_003587.5(DHX16):c.2021C>T (p.Thr674Met)Pathogenic
Intellectual disability;Neurodevelopmental delay;Seizure|Neuromuscular disease and ocular or auditory anomalies with or without seizures|not provided|Neurodevelopmental disorders|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 674
NM_003587.5(DHX16):c.50C>A (p.Ser17Ter)Likely pathogenic
Neuromuscular disease and ocular or auditory anomalies with or without seizures
β˜…β˜†β˜†β˜†2025β†’ Residue 17
NM_003587.5(DHX16):c.2033A>G (p.Glu678Gly)Likely pathogenic
Neuromuscular disease and ocular or auditory anomalies with or without seizures
β˜…β˜†β˜†β˜†2022β†’ Residue 678
NM_003587.5(DHX16):c.1558G>A (p.Asp520Asn)Likely pathogenic
Neurodevelopmental delay
β˜…β˜†β˜†β˜†β†’ Residue 520
NM_003587.5(DHX16):c.2091G>T (p.Gln697His)Pathogenic
Multiple renal cysts;Reduced renal corticomedullary differentiation;Enlarged kidney|Neuromuscular disease and ocular or auditory anomalies with or without seizures|Neurodevelopmental disorders
β˜†β˜†β˜†β˜†2025β†’ Residue 697
NM_003587.5(DHX16):c.1744T>A (p.Phe582Ile)Pathogenic
6 conditions|Neurodevelopmental disorders|Neuromuscular disease and ocular or auditory anomalies with or without seizures
β˜†β˜†β˜†β˜†2020β†’ Residue 582
NM_003587.5(DHX16):c.1280G>A (p.Gly427Glu)Pathogenic
Neurodevelopmental delay;Intellectual disability|Neuromuscular disease and ocular or auditory anomalies with or without seizures|Neurodevelopmental disorders
β˜†β˜†β˜†β˜†2020β†’ Residue 427
View on ClinVar β†—
Related Genes
RNF113AProtein interaction100%BUD31Protein interaction100%XAB2Protein interaction100%PRPF19Protein interaction100%CRIPTProtein interaction100%GPKOWProtein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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DHX16RNF113ABUD31XAB2PRPF19CRIPTGPKOW
PROTEIN STRUCTURE
Preparing viewer…
PDB7DVQ Β· 2.89 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.72LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.60 [0.50–0.72]
RankingsWhere DHX16 stands among ~20K protein-coding genes
  • #4,222of 20,598
    Most Researched112 Β· top quartile
  • #3,180of 5,498
    Most Pathogenic Variants7
  • #5,503of 17,882
    Most Constrained (LOEUF)0.72
Genes detectedDHX16
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Rare Case with Pathogenic Variant in DHX16 Gene Causing Neuromuscular Disease and Oculomotor Anomalies.
PMID: 40141454
Int J Mol Sci Β· 2025
1.00
2
Structural basis of catalytic activation in human splicing.
PMID: 37165190
Nature Β· 2023
0.90
3
Heterozygous loss-of-function DHX9 variants are associated with neurodevelopmental disorders: Human genetic and experimental evidences.
PMID: 37369308
Eur J Med Genet Β· 2023
0.80
4
Infantile onset encephalomyopathy, retinopathy, optic atrophy, and mitochondrial DNA depletion associated with a novel pathogenic DHX16 variant.
PMID: 37574199
Clin Genet Β· 2023
0.70
5
Expansion of the phenotypic spectrum associated with pathogenic missense variation in DHX16.
PMID: 37664979
Am J Med Genet A Β· 2024
0.60