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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
EVC
EvC ciliary complex subunit 1
Chromosome 4 Β· 4p16.2
NCBI Gene: 2121Ensembl: ENSG00000072840.13HGNC: HGNC:3497UniProt: E9PCN4
40PubMed Papers
22Diseases
0Drugs
320Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
ciliumciliary membraneplasma membrane protein complexendochondral bone growthEllis-van Creveld syndromeacrofacial dysostosis, Weyers typeEllis Van Creveld syndromeshort-rib thoracic dysplasia 6 with or without polydactyly
✦AI Summary

EVC (EvC ciliary complex subunit 1) is a component of the EvC complex that positively regulates Hedgehog (Hh) signaling in primary cilia, playing a critical role in endochondral bone growth and skeletal development 1. The protein functions within ciliary complexes essential for normal skeletal morphogenesis, as defects in EVC and related ciliary components cause profound skeletal abnormalities including short ribs, short limbs, and polydactyly 2. EVC mutations cause Ellis-van Creveld (EVC) syndrome, an autosomal recessive skeletal ciliopathy characterized by short stature, postaxial polydactyly, congenital cardiac defects (occurring in ~60% of cases), and dysplastic fingernails and teeth 3. Biallelic EVC variants show variable clinical severity, with missense variants and heterozygous forms presenting milder phenotypes 4. The EVC and EVC2 genes, located head-to-head on chromosome 4, are causative for the syndrome 5. A recently identified genetic modifier, CRMP1, whose coding region partially overlaps with EVC, influences disease severity 4. EVC syndrome belongs to the skeletal ciliopathiesβ€”a broader class of disorders caused by primary ciliary dysfunction affecting skeletal development 2. While EVC dysfunction impairs Hh signaling, complete pathway inhibition shows limited therapeutic benefit in osteoarthritis models, suggesting hypertrophic chondrocyte phenotypes involve multiple pathogenic mechanisms 1.

Sources cited
1
EVC encodes a ciliary complex component; ciliary defects cause skeletal ciliopathies with short ribs, short limbs, and polydactyly
PMID: 29068549
2
EVC positively regulates Hedgehog signaling in primary cilia and is involved in endochondral bone growth
PMID: 35334131
3
Ellis-van Creveld syndrome phenotype includes short stature, polydactyly, cardiac defects in ~60% of cases, dysplastic nails/teeth; autosomal recessive inheritance
PMID: 17547743
4
Biallelic EVC variants show milder phenotypes when missense; CRMP1 identified as genetic modifier of EVC syndrome severity
PMID: 39669252
5
EVC and EVC2 genes located head-to-head on chromosome 4p16; both cause Ellis-van Creveld syndrome
PMID: 15884406
6
EVC mutations include splicing variants that disrupt start codon and cause Ellis-van Creveld syndrome
PMID: 37157924
Disease Associationsβ“˜22
Ellis-van Creveld syndromeOpen Targets
0.81Strong
acrofacial dysostosis, Weyers typeOpen Targets
0.80Strong
Ellis Van Creveld syndromeOpen Targets
0.76Strong
short-rib thoracic dysplasia 6 with or without polydactylyOpen Targets
0.47Moderate
Abnormality of refractionOpen Targets
0.32Weak
cervical carcinomaOpen Targets
0.27Weak
arthritisOpen Targets
0.27Weak
genetic disorderOpen Targets
0.19Weak
multiple sclerosisOpen Targets
0.12Weak
nephronophthisisOpen Targets
0.11Weak
Abnormal pupillary functionOpen Targets
0.09Suggestive
PainOpen Targets
0.09Suggestive
alcohol drinkingOpen Targets
0.09Suggestive
DNA methylationOpen Targets
0.08Suggestive
COVID-19Open Targets
0.07Suggestive
severe acute respiratory syndromeOpen Targets
0.07Suggestive
Paralytic ileusOpen Targets
0.06Suggestive
alopecia areataOpen Targets
0.05Suggestive
craniometadiaphyseal dysplasia, wormian bone typeOpen Targets
0.05Suggestive
cleidocranial dysplasia 1Open Targets
0.05Suggestive
Acrofacial dysostosis, Weyers typeUniProt
Ellis-van Creveld syndromeUniProt
Pathogenic Variants320
NM_153717.3(EVC):c.1777-2A>GPathogenic
Ellis-van Creveld syndrome|Curry-Hall syndrome;Ellis-van Creveld syndrome|not provided
β˜…β˜…β˜†β˜†2026
NM_153717.3(EVC):c.1618del (p.Leu540fs)Pathogenic
Curry-Hall syndrome;Ellis-van Creveld syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 540
NM_153717.3(EVC):c.1021C>T (p.Gln341Ter)Pathogenic
Curry-Hall syndrome;Ellis-van Creveld syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 341
NM_153717.3(EVC):c.1750del (p.Gln584fs)Pathogenic
Ellis-van Creveld syndrome|Curry-Hall syndrome;Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 584
NM_153717.3(EVC):c.940-150T>GLikely pathogenic
Ellis-van Creveld syndrome;Curry-Hall syndrome|EVC-related disorder|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025
NM_153717.3(EVC):c.528del (p.Ser177fs)Pathogenic
Ellis-van Creveld syndrome;Curry-Hall syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 177
NM_153717.3(EVC):c.2731C>T (p.Arg911Ter)Pathogenic
Ellis-van Creveld syndrome;Curry-Hall syndrome|not provided|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 911
NM_153717.3(EVC):c.939+1G>ALikely pathogenic
Curry-Hall syndrome;Ellis-van Creveld syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025
NM_153717.3(EVC):c.90_91insT (p.Ala31fs)Pathogenic
Curry-Hall syndrome;Ellis-van Creveld syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 31
NM_153717.3(EVC):c.802-2A>GLikely pathogenic
Ellis-van Creveld syndrome;Curry-Hall syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025
NM_153717.3(EVC):c.37_38del (p.Arg13fs)Pathogenic
Ellis-van Creveld syndrome|Ellis-van Creveld syndrome;Curry-Hall syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 13
NM_153717.3(EVC):c.1A>C (p.Met1Leu)Pathogenic
Curry-Hall syndrome;Ellis-van Creveld syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_153717.3(EVC):c.1694del (p.Ala565fs)Pathogenic
Ellis-van Creveld syndrome|Curry-Hall syndrome;Ellis-van Creveld syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 565
NM_153717.3(EVC):c.1887-5_1904delPathogenic
Ellis-van Creveld syndrome|Ellis-van Creveld syndrome;Curry-Hall syndrome|not provided|EVC-related disorder
β˜…β˜…β˜†β˜†2025
NM_153717.3(EVC):c.1886+1G>CLikely pathogenic
Ellis-van Creveld syndrome;Curry-Hall syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025
NM_153717.3(EVC):c.873dup (p.Glu292Ter)Pathogenic
Ellis-van Creveld syndrome|Curry-Hall syndrome;Ellis-van Creveld syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 292
NM_153717.3(EVC):c.-16_20del (p.Met1_Ala7del)Likely pathogenic
Ellis-van Creveld syndrome;Curry-Hall syndrome|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_153717.3(EVC):c.1777-1G>APathogenic
Ellis-van Creveld syndrome|Curry-Hall syndrome;Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025
NM_153717.3(EVC):c.2782+1G>TPathogenic
Ellis-van Creveld syndrome|Curry-Hall syndrome;Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025
NM_153717.3(EVC):c.901AAG[1] (p.Lys302del)Likely pathogenic
Short-rib thoracic dysplasia 6 with or without polydactyly|Curry-Hall syndrome;Ellis-van Creveld syndrome|not provided|Ellis-van Creveld syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 302
View on ClinVar β†—
Related Genes
SUFUProtein interaction100%DHCR24Protein interaction88%DYNC2H1Protein interaction80%EFCAB7Protein interaction75%IQCEProtein interaction74%EVC2Protein interaction65%
Tissue Expression6 tissues
Ovary
100%
Heart
37%
Lung
24%
Liver
12%
Brain
6%
Bone Marrow
1%
Gene Interaction Network
Click a node to explore
EVCSUFUDHCR24DYNC2H1EFCAB7IQCEEVC2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P57679
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.13LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.97 [0.83–1.13]
RankingsWhere EVC stands among ~20K protein-coding genes
  • #10,167of 20,598
    Most Researched40
  • #188of 5,498
    Most Pathogenic Variants320 Β· top 5%
  • #11,734of 17,882
    Most Constrained (LOEUF)1.13
Genes detectedEVC
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Expanding the genetic architecture and phenotypic spectrum in the skeletal ciliopathies.
PMID: 29068549
Hum Mutat Β· 2018
1.00
2
PCSK9 Promotes Endothelial Dysfunction During Sepsis Via the TLR4/MyD88/NF-ΞΊB and NLRP3 Pathways.
PMID: 35930089
Inflammation Β· 2023
0.90
3
Ellis-van Creveld syndrome.
PMID: 17547743
Orphanet J Rare Dis Β· 2007
0.80
4
Establishing an objective clinical spectrum, genotype-phenotype correlations, and
PMID: 39669252
Genet Med Open Β· 2023
0.70
5
Multi-cohort study in gastric cancer to develop CT-based radiomic models to predict pathological response to neoadjuvant immunotherapy.
PMID: 40128827
J Transl Med Β· 2025
0.60