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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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EVX2
even-skipped homeobox 2
Chromosome 2 Β· 2q31.1
NCBI Gene: 344191Ensembl: ENSG00000174279.5HGNC: HGNC:3507UniProt: Q03828
16PubMed Papers
20Diseases
0Drugs
1Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
sequence-specific double-stranded DNA bindingprotein bindingchromatinDNA-binding transcription factor activity, RNA polymerase II-specificmultiple sclerosisAlzheimer diseaseParkinson diseaselysosomal storage disease
✦AI Summary

EVX2 (even-skipped homeobox 2) is a transcription factor gene located at the 5' end of the HOXD cluster on chromosome 2 1. EVX2 encodes a homeodomain-containing protein that represents the human homolog of the Drosophila even-skipped segmentation gene 1. The protein functions as a sequence-specific DNA-binding transcription factor involved in developmental regulation, particularly in limb and digit formation 2. EVX2 is transcriptionally active and properly processed in human cells and tissues 1. Mechanistically, EVX2 participates in chr2-mediated regulatory processes, with a functionally conserved boundary element between EVX2 and HOXD13 that helps separate distinct regulatory domains 3. This boundary element requires GAGA factor binding and contributes to the spatial organization of gene expression within the HOXD cluster 3. Disease relevance includes its role in limb malformations, as microdeletions removing EVX2 along with HOXD9-HOXD13 cause synpolydactyly, a dominantly inherited digital anomaly 2. Additionally, EVX2 amplification has been observed in ovarian mature cystic teratomas and may contribute to abnormal chondrogenesis and osteogenesis in these tumors 4. EVX2 promoter hypermethylation has also been identified as a potential biomarker in lung cancer 5.

Sources cited
1
EVX2 location at 5' end of HOXD cluster, homology to Drosophila even-skipped, and transcriptional activity
PMID: 1675198
2
Role in synpolydactyly when deleted along with HOXD9-HOXD13
PMID: 11778160
3
Chromatin boundary element function and GAGA factor requirement
PMID: 21098566
4
Amplification in ovarian teratomas and role in abnormal bone/cartilage development
PMID: 38907278
5
Hypermethylation as potential lung cancer biomarker
PMID: 22143938
Disease Associationsβ“˜20
Alzheimer diseaseOpen Targets
0.34Weak
lysosomal storage diseaseOpen Targets
0.34Weak
multiple sclerosisOpen Targets
0.34Weak
neurodegenerative diseaseOpen Targets
0.34Weak
Parkinson diseaseOpen Targets
0.34Weak
cutaneous lupus erythematosusOpen Targets
0.30Weak
synpolydactyly type 1Open Targets
0.28Weak
exostosisOpen Targets
0.15Weak
benign soft tissue neoplasmOpen Targets
0.13Weak
brachydactyly type A1Open Targets
0.10Suggestive
familial digital arthropathy-brachydactylyOpen Targets
0.09Suggestive
brachydactyly type A2Open Targets
0.09Suggestive
brachydactyly type COpen Targets
0.09Suggestive
Leri-Weill dyschondrosteosisOpen Targets
0.09Suggestive
Brachydactyly - elbow wrist dysplasiaOpen Targets
0.09Suggestive
brachydactyly-elbow wrist dysplasia syndromeOpen Targets
0.09Suggestive
Thiemann disease, familial formOpen Targets
0.09Suggestive
Thumb stiffness - brachydactyly - intellectual disabilityOpen Targets
0.09Suggestive
thumb stiffness-brachydactyly-intellectual disability syndromeOpen Targets
0.09Suggestive
brachydactyly-syndactyly syndromeOpen Targets
0.09Suggestive
Pathogenic Variants1
NC_000002.12:g.176073523_176079120delLikely pathogenic
Synpolydactyly type 1
β˜…β˜†β˜†β˜†
View on ClinVar β†—
Related Genes
MTX2Protein interaction84%LNPKProtein interaction84%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
5%
Lung
0%
Ovary
0%
Heart
0%
Liver
0%
Gene Interaction Network
Click a node to explore
EVX2MTX2LNPK
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q03828
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.23LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.79 [0.52–1.23]
RankingsWhere EVX2 stands among ~20K protein-coding genes
  • #15,256of 20,598
    Most Researched16
  • #5,420of 5,498
    Most Pathogenic Variants1
  • #12,939of 17,882
    Most Constrained (LOEUF)1.23
Genes detectedEVX2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
EVX2, a human homeobox gene homologous to the even-skipped segmentation gene, is localized at the 5' end of HOX4 locus on chromosome 2.
PMID: 1675198
Genomics Β· 1991
1.00
2
Isolation and mapping of EVX1, a human homeobox gene homologous to even-skipped, localized at the 5' end of HOX1 locus on chromosome 7.
PMID: 1684419
Nucleic Acids Res Β· 1991
0.90
3
Amplifications of EVX2 and HOXD9-HOXD13 on 2q31 in mature cystic teratomas of the ovary identified by array comparative genomic hybridization may explain teratoma characteristics in chondrogenesis and osteogenesis.
PMID: 38907278
J Ovarian Res Β· 2024
0.80
4
A 117-kb microdeletion removing HOXD9-HOXD13 and EVX2 causes synpolydactyly.
PMID: 11778160
Am J Hum Genet Β· 2002
0.70
5
A functionally conserved boundary element from the mouse HoxD locus requires GAGA factor in Drosophila.
PMID: 21098566
Development Β· 2010
0.60