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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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FARS2
phenylalanyl-tRNA synthetase 2, mitochondrial
Chromosome 6 Β· 6p25.1
NCBI Gene: 10667Ensembl: ENSG00000145982.14HGNC: HGNC:21062UniProt: O95363
69PubMed Papers
22Diseases
0Drugs
63Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
tRNA bindingphenylalanine-tRNA ligase activityprotein bindingphenylalanyl-tRNA aminoacylationcombined oxidative phosphorylation defect type 14hereditary spastic paraplegia 77hereditary spastic paraplegiagenetic disorder
✦AI Summary

FARS2 encodes the mitochondrial phenylalanyl-tRNA synthetase, responsible for charging mitochondrial tRNA(Phe) with phenylalanine during translation 1. The enzyme catalyzes aminoacylation of mt-tRNAPhe to enable mitochondrial protein synthesis 2. Beyond its canonical function, FARS2 also catalyzes attachment of m-Tyr (oxidized phenylalanine) to tRNA(Phe), potentially delivering ROS-damaged amino acids to mitochondrial ribosomes. FARS2 deficiency impairs mitochondrial homeostasis by blocking mt-tRNAPhe aminoacylation and reducing mitochondrial protein synthesis, ultimately disrupting the mitochondrial quality control system through enhanced mitochondrial hyperfragmentation and disrupted mitophagy 2. Loss of FARS2 function also impairs developmental angiogenesis by reducing mitochondrial respiration and disrupting angiogenic regulatory pathways 3. Pathogenic FARS2 mutations cause multiple severe disorders. Autosomal recessive mutations cause combined oxidative phosphorylation deficiency 14, characterized by early-onset intractable seizures, developmental delay, and encephalopathy 45. FARS2 mutations also cause spastic paraplegia 77, featuring progressive lower limb spasticity from pyramidal tract dysfunction 6. Recently, FARS2 variants were identified as novel cardiomyopathy genes, causing hypertrophic cardiomyopathy with progressive heart failure through mitochondrial dysfunction 2. Disease severity varies, with some compound heterozygous carriers showing slower progression than homozygous patients 7.

Sources cited
1
FARS2 deficiency disrupts mt-tRNAPhe aminoacylation, mitochondrial protein synthesis, and mitochondrial quality control, causing cardiomyopathy with mitochondrial hyperfragmentation
PMID: 38362779
2
FARS2 encodes mitochondrial phenylalanyl-tRNA synthetase catalyzing aminoacylation of mt-tRNAPhe; pathogenic mutations impair aminoacylation activity
PMID: 28419689
3
FARS2 mutations cause early-onset epileptic encephalopathy with intractable seizures, developmental regression, and infantile spasms
PMID: 28043061
4
FARS2 deficiency impairs developmental angiogenesis by reducing mitochondrial respiration and disrupting angiogenic regulatory pathways
PMID: 34540921
5
FARS2 mutations cause infantile-onset encephalopathy with drug-resistant seizures and combined mitochondrial respiratory chain defects
PMID: 27549011
6
Missense mutations in FARS2 cause autosomal-recessive spastic paraplegia through disrupted aminoacylation activity
PMID: 26553276
7
Compound heterozygous FARS2 mutations cause combined oxidative phosphorylation deficiency with variable severity
PMID: 25851414
Disease Associationsβ“˜22
combined oxidative phosphorylation defect type 14Open Targets
0.80Strong
hereditary spastic paraplegia 77Open Targets
0.76Strong
hereditary spastic paraplegiaOpen Targets
0.54Moderate
genetic disorderOpen Targets
0.50Moderate
Leigh syndromeOpen Targets
0.45Moderate
mitochondrial diseaseOpen Targets
0.37Weak
autosomal dominant Alport syndromeOpen Targets
0.37Weak
metabolic diseaseOpen Targets
0.37Weak
COVID-19Open Targets
0.31Weak
severe acute respiratory syndromeOpen Targets
0.31Weak
tooth agenesisOpen Targets
0.30Weak
neurodegenerative diseaseOpen Targets
0.29Weak
nephrotic syndromeOpen Targets
0.28Weak
obesityOpen Targets
0.28Weak
neuroinflammatory disorderOpen Targets
0.27Weak
VertigoOpen Targets
0.27Weak
Global developmental delayOpen Targets
0.26Weak
mitochondrial encephalomyopathyOpen Targets
0.26Weak
gastrointestinal diseaseOpen Targets
0.26Weak
male reproductive organ cancerOpen Targets
0.26Weak
Combined oxidative phosphorylation deficiency 14UniProt
Spastic paraplegia 77, autosomal recessiveUniProt
Pathogenic Variants63
NM_006567.5(FARS2):c.407C>A (p.Pro136His)Pathogenic
Combined oxidative phosphorylation defect type 14|not provided|Combined oxidative phosphorylation defect type 14;Hereditary spastic paraplegia 77|FARS2-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 136
NM_006567.5(FARS2):c.431A>G (p.Tyr144Cys)Pathogenic
Combined oxidative phosphorylation defect type 14|Global developmental delay;Mitochondrial encephalomyopathy|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 144
NM_006567.5(FARS2):c.919C>T (p.Arg307Ter)Pathogenic
not provided|Combined oxidative phosphorylation defect type 14|Autosomal dominant Alport syndrome|FARS2-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 307
NM_006567.5(FARS2):c.1082C>T (p.Pro361Leu)Pathogenic
not provided|Combined oxidative phosphorylation defect type 14|Hereditary spastic paraplegia 77|Inborn genetic diseases|See cases|FARS2-related disorder|Combined oxidative phosphorylation defect type 14;Hereditary spastic paraplegia 77
β˜…β˜…β˜†β˜†2025β†’ Residue 361
NM_006567.5(FARS2):c.646C>T (p.Gln216Ter)Pathogenic
not provided|Combined oxidative phosphorylation defect type 14|FARS2-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 216
NM_006567.5(FARS2):c.467C>T (p.Thr156Met)Pathogenic
Combined oxidative phosphorylation defect type 14|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 156
NM_006567.5(FARS2):c.792del (p.Asp265fs)Pathogenic
Combined oxidative phosphorylation defect type 14|not provided|Inborn genetic diseases|Hereditary spastic paraplegia 77|FARS2-related disorder|Leigh syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 265
NM_006567.5(FARS2):c.1255C>T (p.Arg419Cys)Pathogenic
not provided|Hereditary spastic paraplegia 77|Combined oxidative phosphorylation defect type 14
β˜…β˜…β˜†β˜†2025β†’ Residue 419
NM_006567.5(FARS2):c.946_950del (p.Leu316fs)Pathogenic
not provided|Combined oxidative phosphorylation defect type 14
β˜…β˜…β˜†β˜†2025β†’ Residue 316
NM_006567.5(FARS2):c.298C>T (p.Gln100Ter)Pathogenic
Combined oxidative phosphorylation defect type 14|Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 100
NM_006567.5(FARS2):c.1156C>T (p.Arg386Ter)Pathogenic
Combined oxidative phosphorylation defect type 14|FARS2-related disorder|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 386
NM_006567.5(FARS2):c.925G>A (p.Gly309Ser)Pathogenic
Combined oxidative phosphorylation defect type 14|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 309
NM_006567.5(FARS2):c.1256G>A (p.Arg419His)Pathogenic
not provided|Combined oxidative phosphorylation defect type 14|Hereditary spastic paraplegia 77|See cases
β˜…β˜…β˜†β˜†2023β†’ Residue 419
NM_006567.5(FARS2):c.801C>G (p.Tyr267Ter)Pathogenic
Inborn genetic diseases|Combined oxidative phosphorylation defect type 14
β˜…β˜…β˜†β˜†2019β†’ Residue 267
NM_006567.5(FARS2):c.271G>T (p.Glu91Ter)Pathogenic
Combined oxidative phosphorylation defect type 14
β˜…β˜†β˜†β˜†2026β†’ Residue 91
NM_006567.5(FARS2):c.999G>A (p.Trp333Ter)Pathogenic
Combined oxidative phosphorylation defect type 14
β˜…β˜†β˜†β˜†2025β†’ Residue 333
NM_006567.5(FARS2):c.1128C>G (p.Tyr376Ter)Pathogenic
Combined oxidative phosphorylation defect type 14
β˜…β˜†β˜†β˜†2025β†’ Residue 376
NM_006567.5(FARS2):c.1110G>A (p.Trp370Ter)Pathogenic
Combined oxidative phosphorylation defect type 14
β˜…β˜†β˜†β˜†2025β†’ Residue 370
NM_006567.5(FARS2):c.1205T>C (p.Phe402Ser)Likely pathogenic
Combined oxidative phosphorylation defect type 14
β˜…β˜†β˜†β˜†2025β†’ Residue 402
NM_006567.5(FARS2):c.904+1G>TLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
View on ClinVar β†—
Related Genes
LRRC47Protein interaction94%NDUFAF5Protein interaction91%VARS2Protein interaction91%PARS2Protein interaction90%QARS1Protein interaction89%IARS2Protein interaction88%
Tissue Expression6 tissues
Heart
100%
Brain
63%
Lung
60%
Bone Marrow
59%
Liver
58%
Ovary
45%
Gene Interaction Network
Click a node to explore
FARS2LRRC47NDUFAF5VARS2PARS2QARS1IARS2
PROTEIN STRUCTURE
Preparing viewer…
PDB5MGW Β· 1.46 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.01LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.76 [0.57–1.01]
RankingsWhere FARS2 stands among ~20K protein-coding genes
  • #6,800of 20,598
    Most Researched69
  • #1,130of 5,498
    Most Pathogenic Variants63 Β· top quartile
  • #9,913of 17,882
    Most Constrained (LOEUF)1.01
Genes detectedFARS2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
FARS2 Deficiency Causes Cardiomyopathy by Disrupting Mitochondrial Homeostasis and the Mitochondrial Quality Control System.
PMID: 38362779
Circulation Β· 2024
1.00
2
PMID: 30869852
0.90
3
Hedgehog pathway is negatively regulated during the development of Drosophila melanogaster PheRS-m (Drosophila homologs gene of human FARS2) mutants.
PMID: 36205831
Hum Cell Β· 2023
0.80
4
FARS2 mutation and epilepsy: Possible link with early-onset epileptic encephalopathy.
PMID: 28043061
Epilepsy Res Β· 2017
0.70
5
Developmental Angiogenesis Requires the Mitochondrial Phenylalanyl-tRNA Synthetase.
PMID: 34540921
Front Cardiovasc Med Β· 2021
0.60