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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
FEZF2
FEZ family zinc finger 2
Chromosome 3 Β· 3p14.2
NCBI Gene: 55079Ensembl: ENSG00000153266.14HGNC: HGNC:13506UniProt: A0A140VKG3
21PubMed Papers
20Diseases
0Drugs
5Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
regulation of gene expressionnucleusDNA-binding transcription repressor activity, RNA polymerase II-specificDNA-binding transcription activator activity, RNA polymerase II-specificneurodegenerative diseaseAbruptio PlacentaeNeurodevelopmental disorderbone fracture
✦AI Summary

FEZF2 (FEZ family zinc finger 2) is a transcription factor with critical roles in neurodevelopment and immune tolerance. In the nervous system, FEZF2 functions as a transcriptional regulator essential for cortical layer specification, particularly controlling the development of layer 5-6 pyramidal neurons and corticospinal motor neurons 1. The protein regulates neuronal subtype-specific gene expression patterns, with distinct L5-6_Fezf2 neuronal subtypes showing significant transcriptomic changes in epilepsy 1. FEZF2-positive neurons with unique morphologies, including fork cell-like neurons with characteristic dual apical dendrites, have been identified in the mouse insular cortex 2. Beyond neurodevelopment, FEZF2 plays a crucial role in immune tolerance by regulating tissue-specific antigen (TSA) expression in medullary thymic epithelial cells (mTECs), working alongside AIRE to control autoimmune disease development 34. FEZF2 deficiency is associated with autoimmune manifestations including type 1 diabetes and SjΓΆgren's syndrome 3. Clinically, rare predicted deleterious variants in FEZF2 cause neurodevelopmental disorders characterized by intellectual disability, autism, and developmental delay 5. Additionally, FEZF2 functions as a tumor suppressor that is frequently methylated in nasopharyngeal carcinoma, where it normally represses oncogenes including EZH2 and MDM2 6.

Sources cited
1
FEZF2 controls L5-6 pyramidal neurons and shows transcriptomic changes in epilepsy
PMID: 33028830
2
FEZF2-positive fork cell-like neurons with dual apical dendrites exist in mouse insular cortex
PMID: 36067159
3
FEZF2 regulates tissue-specific antigens in mTECs and its deficiency causes autoimmune diseases
PMID: 36110862
4
FEZF2 regulates transposable elements in mTECs for immune tolerance
PMID: 38635416
5
Rare deleterious FEZF2 variants cause neurodevelopmental disorders including intellectual disability and autism
PMID: 38425142
6
FEZF2 acts as tumor suppressor by repressing EZH2 and MDM2 oncogenes, frequently methylated in nasopharyngeal carcinoma
PMID: 23677067
Disease Associationsβ“˜20
neurodegenerative diseaseOpen Targets
0.49Moderate
Abruptio PlacentaeOpen Targets
0.32Weak
Neurodevelopmental disorderOpen Targets
0.31Weak
bone fractureOpen Targets
0.28Weak
mathematical abilityOpen Targets
0.16Weak
femoral neck fractureOpen Targets
0.16Weak
liver diseaseOpen Targets
0.13Weak
autism spectrum disorderOpen Targets
0.13Weak
Abnormality of the skeletal systemOpen Targets
0.12Weak
hypomyelinating leukodystrophy 5Open Targets
0.12Weak
Hypomyelination - congenital cataractOpen Targets
0.12Weak
diabetic ketoacidosisOpen Targets
0.12Weak
Abnormality of the integumentOpen Targets
0.11Weak
biliary tract diseaseOpen Targets
0.10Suggestive
bone remodeling diseaseOpen Targets
0.10Suggestive
type 2 diabetes mellitusOpen Targets
0.09Suggestive
lacrimal apparatus diseaseOpen Targets
0.09Suggestive
smoking initiationOpen Targets
0.08Suggestive
risk-taking behaviourOpen Targets
0.08Suggestive
vascular diseaseOpen Targets
0.08Suggestive
Pathogenic Variants5
NM_018008.4(FEZF2):c.1298_1302del (p.Lys433fs)Likely pathogenic
FEZF2-related neurodevelopmental condition
β˜…β˜†β˜†β˜†2025β†’ Residue 433
NM_018008.4(FEZF2):c.930C>A (p.Cys310Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 310
NM_018008.4(FEZF2):c.801_802dup (p.Gly268fs)Likely pathogenic
Neurodevelopmental phenotype
β˜…β˜†β˜†β˜†2024β†’ Residue 268
NM_018008.4(FEZF2):c.1266C>G (p.Cys422Trp)Likely pathogenic
Neurodevelopmental disorder
β˜…β˜†β˜†β˜†2024β†’ Residue 422
NM_018008.4(FEZF2):c.1014C>A (p.Cys338Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 338
View on ClinVar β†—
Related Genes
TBR1Protein interaction94%FEZF1Shared pathway80%SOX5Protein interaction77%FOXG1Protein interaction76%NEUROD6Protein interaction75%SATB2Protein interaction75%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
2%
Lung
0%
Heart
0%
Ovary
0%
Liver
0%
Gene Interaction Network
Click a node to explore
FEZF2TBR1FEZF1SOX5FOXG1NEUROD6SATB2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8TBJ5
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.23Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.07 [0.03–0.23]
RankingsWhere FEZF2 stands among ~20K protein-coding genes
  • #13,904of 20,598
    Most Researched21
  • #3,634of 5,498
    Most Pathogenic Variants5
  • #621of 17,882
    Most Constrained (LOEUF)0.23 Β· top 5%
Genes detectedFEZF2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Thymus and autoimmunity.
PMID: 33537838
Semin Immunopathol Β· 2021
1.00
2
Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis.
PMID: 33028830
Nat Commun Β· 2020
0.90
3
Immune tolerance and the prevention of autoimmune diseases essentially depend on thymic tissue homeostasis.
PMID: 38571951
Front Immunol Β· 2024
0.80
4
Aire and Fezf2, two regulators in medullary thymic epithelial cells, control autoimmune diseases by regulating TSAs: Partner or complementer?
PMID: 36110862
Front Immunol Β· 2022
0.70
5
Transposable elements regulate thymus development and function.
PMID: 38635416
Elife Β· 2024
0.60