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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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TBR1
T-box brain transcription factor 1
Chromosome 2 Β· 2q24.2
NCBI Gene: 10716Ensembl: ENSG00000136535.15HGNC: HGNC:11590UniProt: Q16650
52PubMed Papers
21Diseases
0Drugs
70Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
negative regulation of DNA-templated transcriptionprotein bindingnucleusRNA polymerase II cis-regulatory region sequence-specific DNA bindingautism spectrum disorderautismgenetic disorderModerate global developmental delay
✦AI Summary

TBR1 (T-box brain transcription factor 1) is a critical transcriptional regulator that controls multiple aspects of cortical development and neuronal specification 1. The protein functions as a transcriptional repressor involved in neuronal migration, laminar and areal identity, and axonal projection formation during brain development 2. TBR1 regulates the expression of several autism spectrum disorder (ASD) candidate genes and shares regulatory targets with other ASD-associated transcriptional regulators, with binding sites particularly enriched near brain-expressed genes 3. Mechanistically, TBR1 disruption leads to altered cortical layer formation, reduced anterior commissure development, and changes in neuronal cell populations 4. Heterozygous loss-of-function and missense mutations in TBR1 are associated with neurodevelopmental disorders characterized by intellectual disability, autism spectrum traits, and structural brain malformations including frontal pachygyria and hippocampal dysplasia 52. Clinical studies indicate TBR1 mutations contribute to approximately 1% of sporadic ASDs and represent a significant cause of moderate to severe intellectual disability 61. The gene's critical role in cortical development makes it an important diagnostic target for neurodevelopmental conditions with cognitive impairment and autistic features.

Sources cited
1
TBR1 identified as causing intellectual disability through de novo mutations
PMID: 25356899
2
TBR1 functions as transcriptional regulator in cortical development and causes neurocognitive phenotype
PMID: 32005960
3
TBR1 shares regulatory targets with other ASD-associated transcriptional regulators
PMID: 38850535
4
TBR1 mutations cause cortical layer defects and anterior commissure reduction
PMID: 35944998
5
TBR1 mutations lead to frontal pachygyria and intellectual disability
PMID: 30268909
6
TBR1 contributes to 1% of sporadic autism spectrum disorders
PMID: 23160955
Disease Associationsβ“˜21
autism spectrum disorderOpen Targets
0.80Strong
autismOpen Targets
0.72Strong
genetic disorderOpen Targets
0.50Moderate
Moderate global developmental delayOpen Targets
0.49Moderate
Intellectual disabilityOpen Targets
0.47Moderate
complex neurodevelopmental disorderOpen Targets
0.46Moderate
Neurodevelopmental disorderOpen Targets
0.45Moderate
SeizureOpen Targets
0.44Moderate
Autistic behaviorOpen Targets
0.42Moderate
Severe global developmental delayOpen Targets
0.42Moderate
Delayed fine motor developmentOpen Targets
0.39Weak
Abnormal cortical gyrationOpen Targets
0.37Weak
aggressive behaviorOpen Targets
0.36Weak
attention deficit hyperactivity disorderOpen Targets
0.34Weak
Aplasia/Hypoplasia of the corpus callosumOpen Targets
0.34Weak
Atypical behaviorOpen Targets
0.34Weak
intellectual developmental disorder with speech delay, autism and dysmorphic faciesOpen Targets
0.34Weak
Gait ataxiaOpen Targets
0.33Weak
Gait disturbanceOpen Targets
0.33Weak
cerebral cortical dysplasiaOpen Targets
0.27Weak
Intellectual developmental disorder with autism and speech delayUniProt
Pathogenic Variants70
NM_006593.4(TBR1):c.896G>A (p.Trp299Ter)Pathogenic
Autistic behavior;Moderate global developmental delay|Marfanoid habitus and intellectual disability|Intellectual developmental disorder with autism and speech delay
β˜…β˜…β˜†β˜†2026β†’ Residue 299
NM_006593.4(TBR1):c.1190+1G>APathogenic
not provided
β˜…β˜…β˜†β˜†2025
NM_006593.4(TBR1):c.713_719del (p.Ser238fs)Pathogenic
Autistic behavior;Moderate global developmental delay|Intellectual disability|Intellectual developmental disorder with autism and speech delay|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 238
NM_006593.4(TBR1):c.811T>C (p.Trp271Arg)Pathogenic
Severe global developmental delay;Autistic behavior|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 271
NM_006593.4(TBR1):c.1588_1594dup (p.Thr532fs)Pathogenic
not provided|Neurodevelopmental disorder|Intellectual disability|Severe global developmental delay;Autistic behavior|Autistic behavior;Moderate global developmental delay|Severe global developmental delay|Autistic behavior|Intellectual developmental disorder with autism and speech delay|Severe global developmental delay;Abnormal brainstem MRI signal intensity;Autistic behavior;Delayed fine motor development|Inborn genetic diseases|Severe global developmental delay;Hypoplasia of the frontal lobes;Gait ataxia;Delayed fine motor development|Severe global developmental delay;Focal cortical dysplasia;Seizure;Gait ataxia;Delayed fine motor development|Intellectual developmental disorder with speech delay, autism, and dysmorphic facies
β˜…β˜…β˜†β˜†2025β†’ Residue 532
NM_006593.4(TBR1):c.1174C>T (p.Arg392Trp)Pathogenic
Neurodevelopmental disorder|Intellectual developmental disorder with autism and speech delay
β˜…β˜…β˜†β˜†2024β†’ Residue 392
NM_006593.4(TBR1):c.1118A>G (p.Gln373Arg)Pathogenic
Moderate global developmental delay|Aplasia/Hypoplasia of the corpus callosum;Seizure;Atypical behavior;Moderate global developmental delay|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 373
NM_006593.4(TBR1):c.196_199del (p.Asp66fs)Pathogenic
not provided|See cases|Intellectual developmental disorder with autism and speech delay
β˜…β˜…β˜†β˜†2022β†’ Residue 66
NM_006593.4(TBR1):c.1369_1371delinsCA (p.Thr457fs)Pathogenic
Moderate global developmental delay;Autistic behavior|Intellectual disability
β˜…β˜…β˜†β˜†2020β†’ Residue 457
NM_006593.4(TBR1):c.1653_1654del (p.Gln552fs)Likely pathogenic
Severe global developmental delay;Autistic behavior|Intellectual disability
β˜…β˜…β˜†β˜†2020β†’ Residue 552
NM_006593.4(TBR1):c.1589_1595dup (p.Gly533fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 533
NM_006593.4(TBR1):c.1652del (p.Pro551fs)Likely pathogenic
Intellectual developmental disorder with autism and speech delay
β˜…β˜†β˜†β˜†2025β†’ Residue 551
NM_006593.4(TBR1):c.1721_1722del (p.Arg574fs)Likely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 574
NM_006593.4(TBR1):c.1129A>T (p.Ile377Phe)Likely pathogenic
Intellectual developmental disorder with autism and speech delay
β˜…β˜†β˜†β˜†2025β†’ Residue 377
NM_006593.4(TBR1):c.507C>A (p.Tyr169Ter)Pathogenic
Intellectual developmental disorder with autism and speech delay
β˜…β˜†β˜†β˜†2025β†’ Residue 169
NM_006593.4(TBR1):c.1565del (p.Lys522fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 522
NM_006593.4(TBR1):c.1271del (p.Arg424fs)Likely pathogenic
Intellectual developmental disorder with autism and speech delay
β˜…β˜†β˜†β˜†2024β†’ Residue 424
NM_006593.4(TBR1):c.381del (p.Gly128fs)Pathogenic
Neurodevelopmental disorder
β˜…β˜†β˜†β˜†2024β†’ Residue 128
NM_006593.4(TBR1):c.646A>T (p.Lys216Ter)Likely pathogenic
Intellectual developmental disorder with autism and speech delay
β˜…β˜†β˜†β˜†2024β†’ Residue 216
NM_006593.4(TBR1):c.967C>T (p.Gln323Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 323
View on ClinVar β†—
Related Genes
FEZF2Protein interaction94%CASKProtein interaction93%NESProtein interaction89%CUX1Protein interaction88%BCL11BProtein interaction88%GAD1Protein interaction85%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
0%
Liver
0%
Lung
0%
Ovary
0%
Heart
0%
Gene Interaction Network
Click a node to explore
TBR1FEZF2CASKNESCUX1BCL11BGAD1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q16650
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.25Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.12 [0.07–0.25]
RankingsWhere TBR1 stands among ~20K protein-coding genes
  • #8,622of 20,598
    Most Researched52
  • #1,042of 5,498
    Most Pathogenic Variants70 Β· top quartile
  • #743of 17,882
    Most Constrained (LOEUF)0.25 Β· top 5%
Genes detectedTBR1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Autism spectrum disorder: neuropathology and animal models.
PMID: 28584888
Acta Neuropathol Β· 2017
1.00
2
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
PMID: 23160955
Science Β· 2012
0.90
3
De novo mutations in moderate or severe intellectual disability.
PMID: 25356899
PLoS Genet Β· 2014
0.80
4
[Analysis of a child featuring global developmental delay and autism due to variant of TBR1 gene and a literature review].
PMID: 38448025
Zhonghua Yi Xue Yi Chuan Xue Za Zhi Β· 2024
0.70
5
Mutations in TBR1 gene leads to cortical malformations and intellectual disability.
PMID: 30268909
Eur J Med Genet Β· 2018
0.60