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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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FNBP1L
formin binding protein 1 like
Chromosome 1 · 1p22.1
NCBI Gene: 54874Ensembl: ENSG00000137942.19HGNC: HGNC:20851UniProt: B4DSI7
60PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cilium assemblyprotein bindingcadherin bindingGTPase bindingneurodegenerative diseaseovarian neoplasmplacenta praeviaexostosis
✦AI Summary

FNBP1L (formin binding protein 1 like) is a membrane-associated protein essential for coordinating endocytosis with actin cytoskeleton reorganization. The protein contains FCH, FBH, HR1, and SH3 domains, with the FCH domain serving as a microtubule-binding domain and the SH3 domain interacting with formin and WASP family proteins 1. FNBP1L functions as a scaffold protein that promotes CDC42-induced actin polymerization by activating the WASL/N-WASP complex, facilitating membrane invagination and tubule formation during endocytosis 1. A critical function of FNBP1L is in antibacterial autophagy, where it interacts with ATG3 and is essential for autophagy of intracellular pathogens like Salmonella, serving to restrict bacterial growth 2. However, FNBP1L appears dispensable for other autophagy forms induced by starvation or rapamycin 2. The protein also contributes to cellular responses to mechanical stress, with its expression being regulated by cyclic stretch in periodontal ligament cells 3. In dendritic cells, FNBP1L functions as a restriction factor limiting HIV-1 entry, as its knockdown increases viral entry through enhanced endocytosis pathways 4. Recent studies have identified FNBP1L as a component of kidney podocyte foot processes, suggesting roles in maintaining glomerular filtration integrity 5.

Sources cited
1
FNBP1L contains FCH, FBH, HR1, and SH3 domains and functions as a scaffold protein for microtubule, Rho family proteins, and WASP family proteins
PMID: 14654988
2
FNBP1L interacts with ATG3 and is essential for autophagy of intracellular pathogens like Salmonella but dispensable for starvation-induced autophagy
PMID: 19342671
3
FNBP1L expression is regulated by mechanical stretch in periodontal ligament cells
PMID: 28681629
4
FNBP1L functions as a restriction factor limiting HIV-1 entry into dendritic cells
PMID: 40029073
5
FNBP1L is a component of kidney podocyte foot processes and colocalizes with podocin
PMID: 37325559
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.44Moderate
ovarian neoplasmOpen Targets
0.30Weak
placenta praeviaOpen Targets
0.30Weak
exostosisOpen Targets
0.26Weak
injuryOpen Targets
0.24Weak
open-angle glaucomaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
infectionOpen Targets
0.07Suggestive
inflammatory bowel diseaseOpen Targets
0.06Suggestive
triple-negative breast cancerOpen Targets
0.06Suggestive
cancerOpen Targets
0.04Suggestive
intelligenceOpen Targets
0.03Suggestive
HIV-1 infectionOpen Targets
0.03Suggestive
schizophreniaOpen Targets
0.02Suggestive
breast neoplasmOpen Targets
0.02Suggestive
psoriasisOpen Targets
0.02Suggestive
medulloblastomaOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
invasive breast ductal carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
WIPF2Protein interaction100%BIN1Protein interaction100%CDC42Protein interaction100%WASProtein interaction100%WIPF1Protein interaction100%WASF1Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Heart
92%
Lung
42%
Ovary
40%
Liver
40%
Bone Marrow
25%
Gene Interaction Network
Click a node to explore
FNBP1LWIPF2BIN1CDC42WASWIPF1WASF1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q5T0N5
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.72LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.51 [0.37–0.72]
RankingsWhere FNBP1L stands among ~20K protein-coding genes
  • #7,660of 20,598
    Most Researched60
  • #5,539of 17,882
    Most Constrained (LOEUF)0.72
Genes detectedFNBP1L
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
New insights into the interplay between autophagy, gut microbiota and inflammatory responses in IBD.
PMID: 31286804
Autophagy · 2020
1.00
2
Identification and characterization of human FNBP1L gene in silico.
PMID: 14654988
Int J Mol Med · 2004
0.90
3
Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.
PMID: 23358156
Mol Psychiatry · 2014
0.80
4
Impairment of endocytosis-related factors FNBP1L, ARHGAP24, and ATP6V1B1 increases HIV-1 entry into dendritic cells.
PMID: 40029073
J Virol · 2025
0.70
5
Cyclic stretch-induced the cytoskeleton rearrangement and gene expression of cytoskeletal regulators in human periodontal ligament cells.
PMID: 28681629
Acta Odontol Scand · 2017
0.60