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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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FNDC3A
fibronectin type III domain containing 3A
Chromosome 13 Β· 13q14.2
NCBI Gene: 22862Ensembl: ENSG00000102531.17HGNC: HGNC:20296UniProt: Q9Y2H6
62PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
RNA bindingmembraneGolgi apparatuscytoplasmAbnormality of the skeletal systeminsomniagastroesophageal reflux diseasehypothyroidism
✦AI Summary

FNDC3A (fibronectin type III domain containing 3A) is a fibronectin type III domain-containing protein with multifaceted roles in development and disease. Structurally, it comprises a proline-rich N-terminal region, eight type III-fibronectin modules, and a transmembrane helix, localized primarily to Golgi vesicles and the ER 1. In normal physiology, FNDC3A mediates spermatid-Sertoli cell adhesion during spermatogenesis and regulates extracellular matrix formation critical for fin development and regeneration 23. FNDC3A forms a complex with FAM46C that modulates ER-associated protein trafficking, secretion, and autophagy pathways 4. In multiple myeloma, loss of FNDC3A expression occurs in some cell lines, and reconstitution triggers apoptosis through impaired autophagy and protein aggregate accumulation 4. In gastric cancer, FNDC3A functions as a tumor suppressor in the SNHG14/miR-206/FNDC3A regulatory axis, with elevated FNDC3A expression associated with better prognosis 5. Conversely, in triple-negative breast cancer, high FNDC3A expression correlates with poor overall survival and promotes epithelial-to-mesenchymal transition via YAP1 pathway activation 6. These context-dependent roles suggest FNDC3A as a potential therapeutic target across multiple cancer types 7.

Sources cited
1
FNDC3A protein structure (proline-rich region, 8 type III-fibronectin modules, transmembrane helix) and localization in Golgi vesicles
PMID: 18218838
2
FNDC3A regulates extracellular matrix formation essential for fin development and regeneration in zebrafish
PMID: 31527654
3
FNDC3A mediates spermatid-Sertoli cell adhesion and influences developmental processes in vertebrates
PMID: 36254247
4
FNDC3A forms complex with FAM46C as ER-associated protein regulating trafficking, secretion, and autophagy; loss occurs in some multiple myeloma cells
PMID: 32963011
5
FNDC3A functions as tumor suppressor in gastric cancer through SNHG14/miR-206 regulatory axis
PMID: 40521987
6
High FNDC3A expression correlates with poor survival in triple-negative breast cancer and promotes EMT via YAP1 pathway
PMID: 40120859
7
FNDC3A expression elevated in most malignancies with prognostic significance in breast, gastric, and ovarian cancers
PMID: 36626432
Disease Associationsβ“˜20
Abnormality of the skeletal systemOpen Targets
0.42Moderate
insomniaOpen Targets
0.32Weak
gastroesophageal reflux diseaseOpen Targets
0.30Weak
hypothyroidismOpen Targets
0.23Weak
chronic laryngitisOpen Targets
0.19Weak
multinodular goiterOpen Targets
0.18Weak
brain aneurysmOpen Targets
0.17Weak
alcohol drinkingOpen Targets
0.12Weak
azoospermiaOpen Targets
0.10Weak
partial chromosome Y deletionOpen Targets
0.09Suggestive
spermatogenic failure 59Open Targets
0.09Suggestive
spermatogenic failure 60Open Targets
0.09Suggestive
spermatogenic failure 73Open Targets
0.09Suggestive
spermatogenic failure 74Open Targets
0.09Suggestive
spermatogenic failure 61Open Targets
0.09Suggestive
spermatogenic failure 62Open Targets
0.09Suggestive
spermatogenic failure 88Open Targets
0.09Suggestive
Male infertility with spermatogenesis disorder due to single gene mutationOpen Targets
0.08Suggestive
spermatogenic failure 57Open Targets
0.08Suggestive
spermatogenic failure 48Open Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
SPANXB1Shared pathway100%SPACDRShared pathway100%DPY19L2Shared pathway100%CCDC42Shared pathway100%CCDC159Shared pathway100%ZMYND15Shared pathway100%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
78%
Ovary
77%
Heart
60%
Lung
60%
Brain
41%
Gene Interaction Network
Click a node to explore
FNDC3ASPANXB1SPACDRDPY19L2CCDC42CCDC159ZMYND15
PROTEIN STRUCTURE
Preparing viewer…
PDB1WK0 Β· NMR
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.26Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.15 [0.09–0.26]
RankingsWhere FNDC3A stands among ~20K protein-coding genes
  • #7,456of 20,598
    Most Researched62
  • #805of 17,882
    Most Constrained (LOEUF)0.26 Β· top 5%
Genes detectedFNDC3A
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
FAM46C and FNDC3A Are Multiple Myeloma Tumor Suppressors That Act in Concert to Impair Clearing of Protein Aggregates and Autophagy.
PMID: 32963011
Cancer Res Β· 2020
1.00
2
HUGO (FNDC3A): a new gene overexpressed in human odontoblasts.
PMID: 18218838
J Dent Res Β· 2008
0.90
3
LncRNA SNHG14 Regulated by ZNF460 Promotes Gastric Cancer Progression and Metastasis by Targeting the miR-206/FNDC3A Axis.
PMID: 40521987
J Cell Mol Med Β· 2025
0.80
4
Microarray expression profiling of
PMID: 36254247
MicroPubl Biol Β· 2022
0.70
5
Silencing of fibronectin type III domain-containing protein 3A (FNDC3A) attenuates epithelial-to-mesenchymal transition (EMT), cancer invasion, and stemness in triple-negative breast cancer (TNBC).
PMID: 40120859
Biochim Biophys Acta Mol Cell Res Β· 2025
0.60