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18 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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FTSJ3
FtsJ RNA 2'-O-methyltransferase 3
Chromosome 17 · 17q23.3
NCBI Gene: 117246Ensembl: ENSG00000108592.18HGNC: HGNC:17136UniProt: Q8IY81
173PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleolusRNA 2'-O-methyltransferase activityRNA methylationRNA bindingneurodegenerative diseasemetabolic syndromelysosomal storage diseasebreast cancer
✦AI Summary

FTSJ3 is an RNA 2'-O-methyltransferase that functions in both ribosomal RNA processing and viral immune evasion. In normal cellular function, FTSJ3 localizes to the nucleolus and participates in pre-rRNA processing, particularly affecting 18S rRNA maturation through processing of sites A0, 1, and 2 1. The enzyme associates with NIP7 during ribosome biogenesis and is required for proper cell proliferation 1. FTSJ3 also regulates R-loop homeostasis, preventing R-loop-associated DNA damage and maintaining genomic stability 2. In viral infections, particularly HIV-1, FTSJ3 is recruited to viral RNA through interaction with TARBP2/TRBP and catalyzes 2'-O-methylation of the viral genome with preference for adenosine residues 3. This methylation allows HIV-1 to evade innate immune recognition by IFIH1/MDA5 and reduces type I interferon responses 34. The methylation also protects viral RNA from ISG20 nuclease degradation 4. In cancer, FTSJ3 is upregulated and promotes immune evasion by suppressing dsRNA-induced IFNβ signaling, with FTSJ3 deletion enhancing anti-PD-1 immunotherapy efficacy 5. Paradoxically, viral RNA methylation by FTSJ3 can impair HIV-1 reverse transcription, suggesting complex regulatory effects during viral replication 6.

Sources cited
1
FTSJ3 localizes to nucleolus, associates with NIP7, and participates in pre-rRNA processing affecting 18S rRNA maturation
PMID: 22195017
2
FTSJ3 is recruited to HIV-1 RNA via TARBP2/TRBP and methylates viral genome to evade innate immune recognition
PMID: 30626973
3
RNA 2'-O-methylation by FTSJ3 protects HIV-1 from ISG20 nuclease degradation
PMID: 36354007
4
FTSJ3 is upregulated in cancer and suppresses dsRNA-induced IFNβ signaling for immune evasion
PMID: 37963197
5
FTSJ3 regulates R-loop homeostasis and prevents R-loop-associated DNA damage
PMID: 40517939
6
Viral RNA methylation by FTSJ3 impairs HIV-1 reverse transcription
PMID: 38015463
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.52Moderate
metabolic syndromeOpen Targets
0.09Suggestive
lysosomal storage diseaseOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
Genu valgumOpen Targets
0.05Suggestive
Genu varumOpen Targets
0.05Suggestive
cancerOpen Targets
0.05Suggestive
Abnormality of the skeletal systemOpen Targets
0.05Suggestive
glaucomaOpen Targets
0.03Suggestive
open-angle glaucomaOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
lung cancerOpen Targets
0.01Suggestive
gliomaOpen Targets
0.01Suggestive
rectum cancerOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
skin diseaseOpen Targets
0.00Suggestive
supranuclear palsy, progressive, 1Open Targets
0.00Suggestive
viral diseaseOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
WDR46Protein interaction100%BMS1Protein interaction100%NOP14Protein interaction100%NOP56Protein interaction100%PDCD11Protein interaction100%UTP14AProtein interaction100%
Tissue Expression6 tissues
Ovary
100%
Heart
87%
Liver
85%
Lung
81%
Bone Marrow
62%
Brain
54%
Gene Interaction Network
Click a node to explore
FTSJ3WDR46BMS1NOP14NOP56PDCD11UTP14A
PROTEIN STRUCTURE
Preparing viewer…
PDB8FKV · 2.47 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.51Moderately Constrained
pLIⓘ
0.69Intermediate
Observed/Expected LoF0.40 [0.31–0.51]
RankingsWhere FTSJ3 stands among ~20K protein-coding genes
  • #2,545of 20,598
    Most Researched173 · top quartile
  • #3,077of 17,882
    Most Constrained (LOEUF)0.51 · top quartile
Genes detectedFTSJ3
Sources retrieved18 papers
Response time—
📄 Sources
18▼
1
FTSJ3 is an RNA 2'-O-methyltransferase recruited by HIV to avoid innate immune sensing.
PMID: 30626973
Nature · 2019
1.00
2
HIV-1 latency: From acquaintance to confidant.
PMID: 40497153
J Virus Erad · 2025
0.90
3
RNA Methyltransferase FTSJ3 Regulates the Type I Interferon Pathway to Promote Hepatocellular Carcinoma Immune Evasion.
PMID: 37963197
Cancer Res · 2024
0.80
4
The human nucleolar protein FTSJ3 associates with NIP7 and functions in pre-rRNA processing.
PMID: 22195017
PLoS One · 2011
0.70
5
Loss of FTSJ3 promotes R-loop-associated DNA damage and facilitates chemosensitivity in lung cancer cells.
PMID: 40517939
Cancer Lett · 2025
0.60