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GeneE
26 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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FUBP1
far upstream element binding protein 1
Chromosome 1 · 1p31.1
NCBI Gene: 8880Ensembl: ENSG00000162613.18HGNC: HGNC:4004UniProt: A0A384MDX9
217PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusRNA bindingprotein bindingpositive regulation of gene expressionAbnormality of the skeletal systemlymphoid neoplasmhair colorneurodegenerative disease
✦AI Summary

FUBP1 (far upstream element binding protein 1) is a single-stranded nucleic acid-binding protein that primarily regulates MYC expression by binding to the far-upstream element (FUSE) sequence upstream of the MYC promoter 1. Beyond transcriptional regulation, FUBP1 functions as a general splicing factor that stabilizes key 3' splice site recognition components (U2AF2 and SF1) through multivalent binding interfaces, facilitating efficient splicing of long introns that comprise 80% of human introns 2. FUBP1 also regulates aerobic glycolysis in cancer cells 3. FUBP1 exhibits context-dependent roles in cancer with predominantly oncogenic functions. FUBP1 overexpression is associated with poor prognosis in cervical carcinoma, promoting cell proliferation and inhibiting apoptosis via enhanced DNA repair pathways 4. PRMT5-mediated methylation of FUBP1, regulated by BRD4, is crucial for prostate cancer progression and correlates with earlier biochemical recurrence 5. FUBP1 mutations occur in lower-grade gliomas with IDH mutations and 1p/19q codeletion, associated with favorable outcomes 6. FUBP1 is a candidate susceptibility gene for lung cancer 7. Recent evidence suggests FUBP1 plays a role in aging-related processes, with immune-cell-specific effects on telomere length and frailty 8. Targeting FUBP1 methylation or activity represents a potential therapeutic strategy across multiple cancer types.

Sources cited
1
FUBP1 is a single-stranded nucleic acid-binding protein involved in DNA transcription, RNA biogenesis, and translation; shows tissue/context-dependent oncogenic and tumor-suppressive roles
PMID: 39067088
2
FUBP1 functions as a general splicing factor stabilizing U2AF2 and SF1 at 3' splice sites; required for efficient splicing of long introns; mutations impair splicing in cancer patients
PMID: 37506698
3
FUBP1 positively regulates aerobic glycolysis in gastric cancer cells; antagonized by Akkermansia muciniphila-derived pentadecanoic acid
PMID: 38908613
4
FUBP1 overexpression in cervical carcinoma correlates with poor prognosis; promotes cell proliferation and inhibits apoptosis via enhanced DNA repair pathways
PMID: 33476628
5
PRMT5-mediated FUBP1 methylation, regulated by BRD4, is essential for prostate cancer progression and correlates with earlier biochemical recurrence
PMID: 39146021
6
FUBP1 mutations occur in lower-grade gliomas with IDH mutations and 1p/19q codeletion, associated with favorable clinical outcomes
PMID: 26061751
7
FUBP1 is a candidate susceptibility gene for lung cancer identified through cross-ancestry genome-wide meta-analysis
PMID: 35915169
8
FUBP1 is an immune-cell-specific causal gene with effects on telomere length, facial aging, and frailty index in aging
PMID: 40659289
Disease Associationsⓘ20
Abnormality of the skeletal systemOpen Targets
0.55Moderate
lymphoid neoplasmOpen Targets
0.51Moderate
hair colorOpen Targets
0.50Moderate
neurodegenerative diseaseOpen Targets
0.49Moderate
COVID-19Open Targets
0.49Moderate
psoriasisOpen Targets
0.44Moderate
morbid obesityOpen Targets
0.43Moderate
congestive heart failureOpen Targets
0.43Moderate
low grade gliomaOpen Targets
0.42Moderate
cutaneous melanomaOpen Targets
0.42Moderate
lung carcinomaOpen Targets
0.42Moderate
obesityOpen Targets
0.42Moderate
bipolar disorderOpen Targets
0.39Weak
gliomaOpen Targets
0.38Weak
colon adenocarcinomaOpen Targets
0.37Weak
skin basal cell carcinomaOpen Targets
0.37Weak
heart failureOpen Targets
0.37Weak
anaplastic oligodendrogliomaOpen Targets
0.37Weak
gastric carcinomaOpen Targets
0.37Weak
skin squamous cell carcinomaOpen Targets
0.37Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DNMT3BShared pathway100%SF3B1Protein interaction100%MYCProtein interaction100%U2AF2Protein interaction100%ATRXProtein interaction98%PUF60Protein interaction95%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
67%
Lung
39%
Heart
39%
Brain
27%
Liver
20%
Gene Interaction Network
Click a node to explore
FUBP1DNMT3BSF3B1MYCU2AF2ATRXPUF60
PROTEIN STRUCTURE
Preparing viewer…
PDB4LIJ · 1.80 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.28Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.11 [0.05–0.28]
RankingsWhere FUBP1 stands among ~20K protein-coding genes
  • #1,908of 20,598
    Most Researched217 · top 10%
  • #965of 17,882
    Most Constrained (LOEUF)0.28 · top 10%
Genes detectedFUBP1
Sources retrieved26 papers
Response time—
📄 Sources
26▼
1
PRMT5-mediated FUBP1 methylation accelerates prostate cancer progression.
PMID: 39146021
J Clin Invest · 2024
1.00
2
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.
PMID: 26061751
N Engl J Med · 2015
0.90
3
FUBP1 in human cancer: Characteristics, functions, and potential applications.
PMID: 39067088
Transl Oncol · 2024
0.80
4
Mapping the immune-genetic architecture of aging: A single-cell causal framework for biomarker discovery and therapeutic targeting.
PMID: 40659289
Ageing Res Rev · 2025
0.70
5
The transcriptional regulator FUBP1 influences disease outcome in murine and human myeloid leukemia.
PMID: 30635626
Leukemia · 2019
0.68