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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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GCSH
glycine cleavage system protein H
Chromosome 16 Β· 16q23.2
NCBI Gene: 2653Ensembl: ENSG00000140905.12HGNC: HGNC:4208UniProt: P23434
35PubMed Papers
1Diseases
0Drugs
10Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingmitochondrionglycine decarboxylation via glycine cleavage systemglycine cleavage complexMultiple mitochondrial dysfunctions syndrome 7
✦AI Summary

GCSH (glycine cleavage system protein H) is a mitochondrial protein with dual metabolic functions. Functionally, GCSH serves as the lipoyl carrier protein (H-protein) in the glycine cleavage system, shuttling the methylamine group from the P-protein to the T-protein during glycine degradation 1. Beyond glycine metabolism, GCSH has a pivotal moonlighting role in protein lipoylation, facilitating the lipoylation of critical bioenergetic enzymes including pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase 1. This lipoylation function is promoted by direct binding of the lipoyl synthase (LIAS) enzyme to GCSH, a process regulated upstream by ferredoxin FDX1 2. Disease relevance is significant: biallelic GCSH variants cause combined nonketotic hyperglycinemia and lipoate deficiency, with clinical manifestations ranging from neonatal fatal glycine encephalopathy to attenuated developmental delay and seizures 1. Heterozygous mutations may cause transient neonatal hyperglycinemia 3. GCSH dysregulation is also implicated in cancer progression; elevated GCSH expression in endometrial cancer correlates with poor prognosis, immune suppression, and therapeutic resistance 4. GCSH is differentially expressed across metabolic dysfunction-associated fatty liver disease stages 5 and serves as a prognostic biomarker in acute myeloid leukemia 6. GCSH expression is ubiquitous across tissues 7, highlighting its broad metabolic importance.

Sources cited
1
GCSH has dual roles in protein lipoylation and glycine cleavage; pathogenic variants cause combined nonketotic hyperglycinemia and lipoate deficiency
PMID: 36190515
2
FDX1 directly promotes GCSH binding to lipoyl synthase (LIAS) to enable protein lipoylation, essential for cellular respiration
PMID: 37453661
3
High GCSH expression in endometrial cancer associates with poor prognosis, immune suppression, and therapeutic resistance
PMID: 37827132
4
Heterozygous GCSH mutations can cause transient neonatal hyperglycinemia
PMID: 12402263
5
GCSH is expressed in all 29 tissues examined; located on chromosome 16q24
PMID: 11450847
6
GCSH is a cuproptosis-related gene dysregulated in acute myeloid leukemia with prognostic significance
PMID: 38879648
7
GCSH shows significant differences across metabolic dysfunction-associated fatty liver disease spectrum and associates with fibrosis stages
PMID: 39285685
Disease Associationsβ“˜1
Multiple mitochondrial dysfunctions syndrome 7UniProt
Pathogenic Variants10
NM_004483.5(GCSH):c.293-2_293-1insTPathogenic
Multiple mitochondrial dysfunctions syndrome 7|not provided
β˜…β˜…β˜†β˜†2025
NM_004483.5(GCSH):c.1A>G (p.Met1Val)Pathogenic
not provided|Glycine encephalopathy|Multiple mitochondrial dysfunctions syndrome 7|GCSH-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_004483.5(GCSH):c.226C>T (p.Gln76Ter)Pathogenic
not provided|Glycine encephalopathy|Multiple mitochondrial dysfunctions syndrome 7|GCSH-related disorder
β˜…β˜…β˜†β˜†2023β†’ Residue 76
NM_004483.5(GCSH):c.380T>C (p.Leu127Pro)Likely pathogenic
Multiple mitochondrial dysfunctions syndrome 7
β˜…β˜†β˜†β˜†2025β†’ Residue 127
NM_004483.5(GCSH):c.317_318del (p.Val106fs)Likely pathogenic
Multiple mitochondrial dysfunctions syndrome 7
β˜…β˜†β˜†β˜†2025β†’ Residue 106
NM_004483.5(GCSH):c.338_342del (p.Tyr113fs)Pathogenic
Glycine encephalopathy
β˜…β˜†β˜†β˜†2022β†’ Residue 113
NM_004483.5(GCSH):c.344C>T (p.Pro115Leu)Pathogenic
Multiple mitochondrial dysfunctions syndrome 7
β˜†β˜†β˜†β˜†2023β†’ Residue 115
NM_004483.5(GCSH):c.170A>G (p.His57Arg)Pathogenic
Multiple mitochondrial dysfunctions syndrome 7
β˜†β˜†β˜†β˜†2023β†’ Residue 57
NM_004483.5(GCSH):c.293-60_*72dupPathogenic
Multiple mitochondrial dysfunctions syndrome 7
β˜†β˜†β˜†β˜†2023
NM_004483.5(GCSH):c.425-1G>TLikely pathogenic
Glycine encephalopathy
β˜†β˜†β˜†β˜†
View on ClinVar β†—
Related Genes
OGDHProtein interaction100%PDHXProtein interaction100%GLDCProtein interaction100%LIASProtein interaction100%AGXTProtein interaction99%AMTProtein interaction99%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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GCSHOGDHPDHXGLDCLIASAGXTAMT
PROTEIN STRUCTURE
Preparing viewer…
PDB8UGO Β· 2.45 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.54LoF Tolerant
pLIβ“˜
0.33Tolerant
Observed/Expected LoF0.36 [0.13–1.54]
RankingsWhere GCSH stands among ~20K protein-coding genes
  • #10,973of 20,598
    Most Researched35
  • #2,882of 5,498
    Most Pathogenic Variants10
  • #15,384of 17,882
    Most Constrained (LOEUF)1.54
Genes detectedGCSH
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
FDX1 regulates cellular protein lipoylation through direct binding to LIAS.
PMID: 37453661
J Biol Chem Β· 2023
1.00
2
Comprehensive Analysis of the Relationship between Cuproptosis-Related Gene GCSH and Prognosis, Tumor Microenvironment Infiltration, and Therapy Response in Endometrial Cancer.
PMID: 37827132
Oncology Β· 2024
0.90
3
Chromosomal localization, structure, single-nucleotide polymorphisms, and expression of the human H-protein gene of the glycine cleavage system (GCSH), a candidate gene for nonketotic hyperglycinemia.
PMID: 11450847
J Hum Genet Β· 2001
0.80
4
Pathogenic variants in GCSH encoding the moonlighting H-protein cause combined nonketotic hyperglycinemia and lipoate deficiency.
PMID: 36190515
Hum Mol Genet Β· 2023
0.70
5
Exploring and clinical validation of prognostic significance and therapeutic implications of copper homeostasis-related gene dysregulation in acute myeloid leukemia.
PMID: 38879648
Ann Hematol Β· 2024
0.60