HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
GNAT1
G protein subunit alpha transducin 1
Chromosome 3 · 3p21.31
NCBI Gene: 2779Ensembl: ENSG00000114349.10HGNC: HGNC:4393UniProt: P11488
47PubMed Papers
22Diseases
0Drugs
25Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
photoreceptor inner segmentphotoreceptor outer segmentphototransduction, visible lightvisual perceptioncongenital stationary night blindnesscongenital stationary night blindness autosomal dominant 3inherited retinal dystrophyretinitis pigmentosa
✦AI Summary

GNAT1 encodes the α-subunit of rod transducin, a critical G protein that functions as a signal transducer downstream of rhodopsin (RHO) in rod photoreceptors 1. Upon light activation, RHO promotes GDP release and GTP binding to GNAT1, enabling its interaction with downstream effector proteins including cGMP-phosphodiesterase to modulate cyclic nucleotide levels and elicit electrical changes in photoreceptor cells 2. This phototransduction cascade represents the first neuronal step in vision perception 1. Pathogenic variants in GNAT1 cause inherited retinal diseases, primarily congenital stationary night blindness (CSNB). Autosomal dominant missense variants like p.G38D cause Nougaret-type CSNB with characteristic electronegative electroretinograms and delayed, broadened a-waves 3. Autosomal recessive GNAT1 mutations present with early-onset night blindness; homozygous truncating mutations can cause late-onset retinitis pigmentosa with progressive retinal degeneration in addition to lifelong night blindness 4. In-frame deletions produce similar rod-specific dysfunction with reduced scotopic responses 5. Clinically, GNAT1-associated retinal disease manifests as nonprogressive night blindness with electroretinographic evidence of rod photoreceptor dysfunction, often accompanied by nystagmus and myopia 2. The severity depends on mutation type and inheritance pattern, with recessive complete loss-of-function variants causing the most severe phenotypes.

Sources cited
1
GNAT1 is among genes encoding phototransduction proteins; pathogenic variants cause significant vision impairment in inherited retinal disease
PMID: 40013354
2
Homozygous missense mutation p.D129G in GNAT1 causes autosomal recessive congenital stationary night blindness; Gnat1 is expressed in retina from postnatal day 7
PMID: 22190596
3
GNAT1 variant p.G38D causes Nougaret-type autosomal dominant CSNB with characteristic electronegative ERG pattern and delayed, broadened a-waves; no rod ERG response detected
PMID: 31583501
4
Homozygous truncating GNAT1 mutation causes recessive, mild, late-onset retinal degeneration (retinitis pigmentosa) in addition to lifelong night blindness; first report of complete loss-of-function GNAT1 mutation
PMID: 26472407
5
Homozygous in-frame deletion c.818_820delAGA (p.Lys273del) in GNAT1 causes night blindness with golden fundus appearance and electronegative ERGs with reduced a-waves
PMID: 31696758
Disease Associationsⓘ22
congenital stationary night blindnessOpen Targets
0.69Moderate
congenital stationary night blindness autosomal dominant 3Open Targets
0.47Moderate
inherited retinal dystrophyOpen Targets
0.46Moderate
retinitis pigmentosaOpen Targets
0.44Moderate
retinal degenerationOpen Targets
0.38Weak
Cone rod dystrophyOpen Targets
0.37Weak
Rod-cone dystrophyOpen Targets
0.37Weak
cone-rod dystrophyOpen Targets
0.37Weak
Retinal dystrophyOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.31Weak
genetic disorderOpen Targets
0.19Weak
insomniaOpen Targets
0.17Weak
cannabis dependenceOpen Targets
0.12Weak
smoking initiationOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
X-linked retinal dysplasiaOpen Targets
0.06Suggestive
Familial exudative vitreoretinopathyOpen Targets
0.05Suggestive
choroidal dystrophy, central areolar, 1Open Targets
0.05Suggestive
severe early-childhood-onset retinal dystrophyOpen Targets
0.05Suggestive
Stargardt diseaseOpen Targets
0.05Suggestive
Night blindness, congenital stationary, 1GUniProt
Night blindness, congenital stationary, autosomal dominant 3UniProt
Pathogenic Variants25
NM_144499.3(GNAT1):c.273C>A (p.Tyr91Ter)Pathogenic
not provided|Congenital stationary night blindness 1G;Congenital stationary night blindness autosomal dominant 3
★★☆☆2025→ Residue 91
NM_144499.3(GNAT1):c.282del (p.Ala95fs)Pathogenic
Retinal dystrophy|not provided
★★☆☆2024→ Residue 95
NM_144499.3(GNAT1):c.904C>T (p.Gln302Ter)Pathogenic
Congenital stationary night blindness 1G|not provided
★★☆☆2024→ Residue 302
NM_144499.3(GNAT1):c.281_282del (p.Ser94fs)Pathogenic
not provided|Congenital stationary night blindness 1G
★★☆☆2022→ Residue 94
NM_144499.3(GNAT1):c.499G>T (p.Glu167Ter)Pathogenic
not provided
★☆☆☆2026→ Residue 167
NM_144499.3(GNAT1):c.435del (p.Asn145fs)Pathogenic
not provided
★☆☆☆2025→ Residue 145
NM_144499.3(GNAT1):c.146_149dup (p.Lys50fs)Pathogenic
not provided
★☆☆☆2025→ Residue 50
NM_144499.3(GNAT1):c.579-1G>ALikely pathogenic
not provided
★☆☆☆2024
NM_144499.3(GNAT1):c.124A>G (p.Lys42Glu)Likely pathogenic
Congenital stationary night blindness 1C
★☆☆☆2024→ Residue 42
NM_144499.3(GNAT1):c.98T>C (p.Leu33Pro)Likely pathogenic
Congenital stationary night blindness 1C
★☆☆☆2024→ Residue 33
NM_144499.3(GNAT1):c.1053A>G (p.Ter351Trp)Likely pathogenic
Retinal dystrophy
★☆☆☆2024→ Residue 351
NM_144499.3(GNAT1):c.578+1G>CLikely pathogenic
not provided
★☆☆☆2024
NM_144499.3(GNAT1):c.171C>G (p.Tyr57Ter)Pathogenic
not provided
★☆☆☆2023→ Residue 57
NM_144499.3(GNAT1):c.678C>G (p.Tyr226Ter)Pathogenic
not provided
★☆☆☆2023→ Residue 226
NM_144499.3(GNAT1):c.419C>A (p.Ser140Ter)Pathogenic
not provided
★☆☆☆2023→ Residue 140
NM_144499.3(GNAT1):c.210C>G (p.Tyr70Ter)Pathogenic
not provided
★☆☆☆2022→ Residue 70
NM_144499.3(GNAT1):c.51del (p.Lys18fs)Pathogenic
not provided
★☆☆☆2021→ Residue 18
NM_144499.3(GNAT1):c.607G>T (p.Glu203Ter)Pathogenic
not provided
★☆☆☆2021→ Residue 203
NM_144499.3(GNAT1):c.255_273del (p.Thr86fs)Pathogenic
not provided
★☆☆☆2020→ Residue 86
NM_144499.3(GNAT1):c.82C>T (p.Arg28Ter)Likely pathogenic
not provided
★☆☆☆2019→ Residue 28
View on ClinVar ↗
Related Genes
GNGT1Protein interaction100%GNG13Protein interaction100%GNG4Protein interaction100%GNGT2Protein interaction100%GNG2Protein interaction100%GNG7Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Brain
33%
Bone Marrow
3%
Lung
3%
Heart
0%
Ovary
0%
Gene Interaction Network
Click a node to explore
GNAT1GNGT1GNG13GNG4GNGT2GNG2GNG7
PROTEIN STRUCTURE
Preparing viewer…
PDB3RBQ · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.14LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.86 [0.66–1.14]
RankingsWhere GNAT1 stands among ~20K protein-coding genes
  • #9,209of 20,598
    Most Researched47
  • #1,987of 5,498
    Most Pathogenic Variants25
  • #11,797of 17,882
    Most Constrained (LOEUF)1.14
Genes detectedGNAT1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Monogenic Retinal Diseases Associated With Genes Encoding Phototransduction Proteins: A Review.
PMID: 40013354
Clin Exp Ophthalmol · 2025
1.00
2
Coexistence of GNAT1 and ABCA4 variants associated with Nougaret-type congenital stationary night blindness and childhood-onset cone-rod dystrophy.
PMID: 31583501
Doc Ophthalmol · 2020
0.90
3
[Expression, loss of heterozygosity, and methylation of GNAT1 gene in nasopharyngeal carcinoma].
PMID: 17222360
Ai Zheng · 2007
0.80
4
Novel homozygous in-frame deletion of
PMID: 31696758
Ophthalmic Genet · 2019
0.70
5
A novel homozygous truncating GNAT1 mutation implicated in retinal degeneration.
PMID: 26472407
Br J Ophthalmol · 2016
0.60