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8 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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GTF3C5
general transcription factor IIIC subunit 5
Chromosome 9 · 9q34.13
NCBI Gene: 9328Ensembl: ENSG00000148308.18HGNC: HGNC:4668UniProt: H7BY84
131PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase III general transcription initiation factor activitynucleoplasmtranscription factor TFIIIC complexnucleusneurodegenerative diseaseIntellectual disabilityNeurodevelopmental disorderthrombocytopenia 4
✦AI Summary

GTF3C5 encodes transcription factor IIIC63 (TFIIIC63), an integral component of the TFIIIC2 DNA-binding subcomplex essential for RNA polymerase III (Pol III)-mediated transcription 1. It directly binds tRNA and viral promoters to recruit TFIIIB and Pol III, facilitating transcription of small noncoding RNAs including tRNAs and 5S rRNA [UniProt/GO annotations]. GTF3C5 additionally interacts with transcription factors including NFκB-p65 to direct site-specific DNA methylation 2. Biallelic GTF3C5 variants cause a multisystem developmental disorder characterized by growth retardation, developmental delay, intellectual disability, dental anomalies, cerebellar malformations, and skeletal abnormalities 1. Affected individuals show reduced TFIIIC63 protein levels and approximately 40% reduction in Pol III occupancy at target genomic regions, indicating partial transcriptional impairment 1. GTF3C5 mutations also contribute to pigmentary mosaicism when present as compound heterozygous germline variants 3. Common GTF3C5 variants associate with lipid metabolism and cardiovascular phenotypes, with specific variants enriched in Finnish populations linked to reduced LDL cholesterol concentrations 4. GTF3C5 variants also influence polycythemia vera susceptibility in conjunction with GFI1B 5 and correlate with type 2 diabetes-associated skeletal muscle dysfunction through endoplasmic reticulum stress pathways 6. Additionally, GTF3C5 expression changes occur in pancreatic islets during β-cell death, suggesting relevance to diabetes pathogenesis 7.

Sources cited
1
Biallelic GTF3C5 variants cause multisystem developmental disorder with reduced TFIIIC63 protein and Pol III occupancy; GTF3C5 encodes TFIIIC63 which recruits TFIIIB and Pol III for small noncoding RNA transcription
PMID: 38520561
2
GTF3C5 interacts with transcription factors including NFκB-p65 to direct site-specific DNA methylation
PMID: 24952347
3
Compound heterozygous GTF3C5 variants identified in patient with pigmentary mosaicism
PMID: 35503477
4
GTF3C5 variants associated with lipid phenotypes including LDL cholesterol concentrations; variants enriched in Finnish population linked to cardiovascular phenotypes
PMID: 36419110
5
GTF3C5 variants at GFI1B-GTF3C5 locus predispose to polycythemia vera
PMID: 41026930
6
GTF3C5 expression correlates with type 2 diabetes traits through endoplasmic reticulum stress and unfolded protein response pathways in skeletal muscle
PMID: 31959871
7
GTF3C5 lncRNA isoform (GTF3C5-1:1) enriched in human pancreatic islets and deregulated during β-cell death
PMID: 38027148
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.50Moderate
Intellectual disabilityOpen Targets
0.37Weak
Neurodevelopmental disorderOpen Targets
0.37Weak
hemorrhagic diseaseOpen Targets
0.33Weak
thrombocytopenia 4Open Targets
0.33Weak
neuroendocrine neoplasmOpen Targets
0.26Weak
disorder of visual systemOpen Targets
0.26Weak
complex neurodevelopmental disorderOpen Targets
0.18Weak
myeloproliferative disorderOpen Targets
0.18Weak
polycythemia veraOpen Targets
0.14Weak
myopathy, myofibrillar, 12, infantile-onset, with cardiomyopathyOpen Targets
0.12Weak
angina pectorisOpen Targets
0.00Suggestive
Myocardial IschemiaOpen Targets
0.00Suggestive
bacteriemiaOpen Targets
0.00Suggestive
genetic disorderOpen Targets
0.00Suggestive
malariaOpen Targets
0.00Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.00Suggestive
metabolic syndromeOpen Targets
0.00Suggestive
colorectal adenocarcinomaOpen Targets
0.00Suggestive
Uveal MelanomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TBPProtein interaction100%BDP1Protein interaction100%GTF3C3Protein interaction98%POLR3FProtein interaction97%GTF3C2Protein interaction89%POLR3CProtein interaction85%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
89%
Heart
72%
Liver
64%
Lung
58%
Brain
57%
Gene Interaction Network
Click a node to explore
GTF3C5TBPBDP1GTF3C3POLR3FGTF3C2POLR3C
PROTEIN STRUCTURE
Preparing viewer…
PDB9GI4 · 2.63 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.05LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.81 [0.64–1.05]
RankingsWhere GTF3C5 stands among ~20K protein-coding genes
  • #3,560of 20,598
    Most Researched131 · top quartile
  • #10,530of 17,882
    Most Constrained (LOEUF)1.05
Genes detectedGTF3C5
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
Monogenic causes of pigmentary mosaicism.
PMID: 35503477
Hum Genet · 2022
1.00
2
Identification of diagnostic genes for myocardial ischemia reperfusion injury associated with metabolic syndrome through the integration of bioinformatics analysis, molecular docking and experimental validation.
PMID: 40510362
Front Immunol · 2025
0.88
3
Whole-exome sequencing identifies novel protein-altering variants associated with serum apolipoprotein and lipid concentrations.
PMID: 36419110
Genome Med · 2022
0.75
4
Genome-wide analysis defines genetic determinants of MPN subtypes and identifies a sex-specific association at CDH22/CD40.
PMID: 41026930
Blood · 2025
0.63
5
Exploring lncRNAs associated with human pancreatic islet cell death induced by transfer of adoptive lymphocytes in a humanized mouse model.
PMID: 38027148
Front Endocrinol (Lausanne) · 2023
0.50