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GeneE
2 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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H2AC20
H2A clustered histone 20
Chromosome 1 · 1q21.2
NCBI Gene: 8338Ensembl: ENSG00000184260.6HGNC: HGNC:4738UniProt: Q16777
210PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extracellular exosomenucleusnucleoplasmstructural constituent of chromatinviral diseaseinfectious diseasebreast carcinomacancer
✦AI Summary

H2AC20 is a core histone variant that functions as a structural component of nucleosomes, helping to wrap and compact DNA into chr1. Based on limited published evidence, H2AC20 regulates DNA accessibility and plays roles in transcription regulation, DNA repair, and chr1 stability through histone post-translational modifications and nucleosome remodeling. Recent studies show H2AC20 is downregulated by ASF1B in gastric cancer, affecting PI3K/AKT and ERK1/2 signaling 1, and is uniquely upregulated in adipocyte-derived extracellular vesicles in obesity contexts 2.

Sources cited
1
ASF1B promotes gastric cancer progression by downregulating H2AC20, influencing PI3K/AKT and ERK1/2 pathway activation
PMID: 40041497
2
H2AC20 is uniquely upregulated in adipocyte-derived extracellular vesicles in obesity-associated pathobiology
PMID: 41128489
⚠Limited data available — This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
viral diseaseOpen Targets
0.50Moderate
infectious diseaseOpen Targets
0.50Moderate
breast carcinomaOpen Targets
0.38Weak
cancerOpen Targets
0.37Weak
melanomaOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
actinic keratosisOpen Targets
0.05Suggestive
sebaceous of Jadassohn nevusOpen Targets
0.05Suggestive
squamous cell carcinomaOpen Targets
0.05Suggestive
intrahepatic cholangiocarcinomaOpen Targets
0.03Suggestive
aortic stenosisOpen Targets
0.03Suggestive
systemic lupus erythematosusOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
gastric cancerOpen Targets
0.02Suggestive
experimental autoimmune encephalomyelitisOpen Targets
0.02Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.01Suggestive
glioblastoma multiformeOpen Targets
0.01Suggestive
Bartsocas-Papas syndrome 1Open Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2AL3Shared pathway100%H2AC1Shared pathway100%CBX2Shared pathway100%L3MBTL2Shared pathway100%PHC3Shared pathway100%BCORL1Shared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
19%
Lung
14%
Liver
9%
Brain
2%
Heart
0%
Gene Interaction Network
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H2AC20H2AL3H2AC1CBX2L3MBTL2PHC3BCORL1
PROTEIN STRUCTURE
Preparing viewer…
PDB7U0G · 2.60 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.66LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.92 [0.52–1.66]
RankingsWhere H2AC20 stands among ~20K protein-coding genes
  • #1,986of 20,598
    Most Researched210 · top 10%
  • #15,930of 17,882
    Most Constrained (LOEUF)1.66
Genes detectedH2AC20
Sources retrieved2 papers
Response time—
📄 Sources
2
1
ASF1B promotes gastric cancer progression by modulating H2AC20 and activating PI3K/AKT and ERK1/2 pathways.
PMID: 40041497
Front Pharmacol · 2025
1.00
2
Multiparametric Bulk and Single Extracellular Vesicle Pipeline for Identifying Adipose-Specific Signatures in Matched Human Biospecimens.
PMID: 41128489
ACS Appl Mater Interfaces · 2025
0.50