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GeneE
3 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
H2AC6
H2A clustered histone 6
Chromosome 6 Β· 6p22.2
NCBI Gene: 8334Ensembl: ENSG00000180573.10HGNC: HGNC:4733UniProt: Q93077
77PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
negative regulation of cell population proliferationextracellular exosomenucleusprotein bindingviral diseaseinfectious diseasebreast carcinomacancer
✦AI Summary

H2AC6 is a core histone protein that functions as a structural component of nucleosomes, the fundamental units of chr6 organization [UniProt]. As part of the nucleosome complex, H2AC6 wraps DNA and regulates chr6 accessibility, playing central roles in transcription regulation, DNA repair, DNA replication, and chr6 stability [UniProt]. The protein participates in heterochromatin formation and chr6 organization through post-translational modifications and nucleosome remodeling [GO Annotations]. Regarding disease relevance, H2AC6 expression has been identified as a risk factor in intervertebral disc degeneration (IVDD), where elevated H2AC6 expression positively correlates with increased degeneration risk through lactylation-related mechanisms 1. In esophageal squamous cell carcinoma (ESCC), H2AC6 emerged as one of three novel genes critical for patient survival, identified through comparative transcriptomic analysis across global populations 2. Additionally, H2AC6 was among downregulated genes in circulating extracellular vesicles following exercise training in long COVID patients, suggesting involvement in inflammation and metabolic pathways responsive to therapeutic intervention 3. These findings suggest H2AC6 may serve as a biomarker for ESCC prognosis and potentially a therapeutic target in lactylation-related degenerative diseases, though further mechanistic studies are needed to establish causal relationships.

Sources cited
1
H2AC6 expression is positively correlated with increased risk of intervertebral disc degeneration through lactylation-related mechanisms
PMID: 40988222
2
H2AC6 is one of three novel genes critical for esophageal squamous cell carcinoma survival
PMID: 37641095
3
H2AC6 is downregulated in extracellular vesicles during peak exercise after training in long COVID patients, involved in inflammation and metabolic pathways
PMID: 41588020
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
infectious diseaseOpen Targets
0.50Moderate
viral diseaseOpen Targets
0.50Moderate
breast carcinomaOpen Targets
0.37Weak
cancerOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
melanomaOpen Targets
0.37Weak
kidney oncocytomaOpen Targets
0.01Suggestive
autismOpen Targets
0.01Suggestive
esophageal squamous cell carcinomaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
cystic fibrosisOpen Targets
0.01Suggestive
chromophobe renal cell carcinomaOpen Targets
0.01Suggestive
pancreatic carcinomaOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.01Suggestive
SepsisOpen Targets
0.00Suggestive
invasive breast ductal carcinomaOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
psoriatic arthritisOpen Targets
0.00Suggestive
pituitary cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
H2AC4Shared pathway100%KMT5AProtein interaction100%H2BC17Protein interaction100%H2BC12Protein interaction100%H2BC14Protein interaction100%H2BC11Protein interaction99%
Tissue Expression6 tissues
Liver
100%
Brain
76%
Lung
60%
Bone Marrow
39%
Heart
38%
Ovary
24%
Gene Interaction Network
Click a node to explore
H2AC6H2AC4KMT5AH2BC17H2BC12H2BC14H2BC11
PROTEIN STRUCTURE
Preparing viewer…
PDB7R5R Β· 2.44 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.43LoF Tolerant
pLIβ“˜
0.03Tolerant
Observed/Expected LoF0.69 [0.36–1.43]
RankingsWhere H2AC6 stands among ~20K protein-coding genes
  • #6,164of 20,598
    Most Researched77
  • #14,708of 17,882
    Most Constrained (LOEUF)1.43
Genes detectedH2AC6
Sources retrieved3 papers
Response timeβ€”
πŸ“„ Sources
3
1
Inhibition of lactylation by LRP1 expression increases the risk of intervertebral disc degeneration: A multi-omics summary-based Mendelian randomization analysis.
PMID: 40988222
Medicine (Baltimore) Β· 2025
1.00
2
Global comparative transcriptomes uncover novel and population-specific gene expression in esophageal squamous cell carcinoma.
PMID: 37641095
Infect Agent Cancer Β· 2023
0.67
3
Serum extracellular vesicle RNA profiles in long COVID: insights from exercise-induced gene modulation.
PMID: 41588020
Sci Rep Β· 2026
0.33