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GeneE
2 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
H2AC7
H2A clustered histone 7
Chromosome 6 · 6p22.2
NCBI Gene: 3013Ensembl: ENSG00000196866.3HGNC: HGNC:4729UniProt: B2R5B6
66PubMed Papers
14Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extracellular exosomenucleusnucleoplasmstructural constituent of chromatininfectious diseaseviral diseasebreast carcinomacancer
✦AI Summary

Based on limited published evidence, H2AC7 is a core histone protein functioning as a structural component of nucleosomes. As part of the nucleosome complex, H2AC7 wraps and compacts DNA into chr6, regulating DNA accessibility for transcription, DNA repair, replication, and chr6 stability through histone modifications and nucleosome remodeling. Recent research identified H2AC7 as a positive regulator of innate immune pathways, specifically promoting interferon-β production 1. H2AC7 variants have been identified in spontaneous abortion cases, suggesting potential developmental significance 2.

Sources cited
1
H2AC7 identified as a positive regulator of innate immune pathways that promotes interferon-β production; interactions with viral proteins impair this immune function
PMID: 40952118
2
H2AC7 identified as a potential candidate gene associated with spontaneous abortion through CNV analysis
PMID: 38764094
⚠Limited data available — This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ14
infectious diseaseOpen Targets
0.50Moderate
viral diseaseOpen Targets
0.50Moderate
breast carcinomaOpen Targets
0.37Weak
cancerOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
melanomaOpen Targets
0.37Weak
lung adenocarcinomaOpen Targets
0.01Suggestive
achalasia-alacrima syndromeOpen Targets
0.01Suggestive
systemic lupus erythematosusOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
malignant pleural mesotheliomaOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
abortionOpen Targets
0.00Suggestive
psychiatric disorderOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2AL3Shared pathway100%H2AC21Shared pathway100%H2AC1Shared pathway100%AEBP2Shared pathway100%H2AC12Shared pathway100%CBX2Shared pathway100%
Tissue Expression6 tissues
Lung
100%
Liver
94%
Ovary
19%
Brain
16%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
H2AC7H2AL3H2AC21H2AC1AEBP2H2AC12CBX2
PROTEIN STRUCTURE
Preparing viewer…
PDB7WLP · 2.29 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.96LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.77 [1.11–1.96]
RankingsWhere H2AC7 stands among ~20K protein-coding genes
  • #7,071of 20,598
    Most Researched66
  • #17,735of 17,882
    Most Constrained (LOEUF)1.96
Genes detectedH2AC7
Sources retrieved2 papers
Response time—
📄 Sources
2
1
Analysis of copy number variants detected by sequencing in spontaneous abortion.
PMID: 38764094
Mol Cytogenet · 2024
1.00
2
Human herpesvirus 6B U65 binds to histone proteins and suppresses interferon production.
PMID: 40952118
J Virol · 2025
0.50