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3 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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H2AZ2
H2A.Z variant histone 2
Chromosome 7 · 7p13
NCBI Gene: 94239Ensembl: ENSG00000105968.20HGNC: HGNC:20664UniProt: Q71UI9
129PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
molecular adaptor activityextracellular exosomenucleusstructural constituent of chromatinmelanomacancerbreast carcinomaalcohol drinking
✦AI Summary

H2A.Z2 is a histone variant that replaces conventional H2A in nucleosomes to regulate chr7 accessibility and gene expression. As a structural component of chr7, H2A.Z2 facilitates transcription factor recruitment to gene promoters and enhancers, thereby controlling DNA accessibility for transcriptional machinery 1. In normal physiology, H2A.Z2 expression is dynamically regulated during keratinocyte differentiation, with SRCAP-dependent deposition essential for epidermal progenitor maintenance and nuclear integrity 2. H2A.Z2 has emerged as an oncogenic factor in multiple cancer types. In cervical cancer, H2A.Z2 is overexpressed and enriched at promoters and enhancers of proliferation-associated genes, with transcription factors AP2α and ELK1 driving its upregulation 3. In glioblastoma, H2A.Z2 overexpression sustains chr7 accessibility at cell cycle genes and is co-activated by E2F1 and STAT3 transcriptional synergy 1. Clinically, E2F/STAT3 inhibitor combinations effectively suppress glioblastoma tumorigenicity in xenograft models, suggesting H2A.Z2 as a therapeutic target 1. The dual role of H2A.Z2—essential for normal progenitor function yet frequently dysregulated in cancer—indicates context-dependent contributions to both cellular homeostasis and malignant transformation.

Sources cited
1
H2A.Z is overexpressed in cervical cancer and enriched at promoters/enhancers of proliferation-associated genes; AP2α and ELK1 regulate H2A.Z expression
PMID: 35317119
2
H2A.Z2 is overexpressed in glioblastoma and sustains chromatin accessibility; E2F1 and STAT3 synergistically activate H2A.Z2 transcription; E2F/STAT3 inhibitors suppress GSC tumorigenicity
PMID: 35058574
3
H2A.Z2 is essential for epidermal progenitor proliferation and nuclear integrity; SRCAP mediates H2A.Z2 deposition; ERK and mTOR signaling regulate H2A.Z2 chromatin occupancy
PMID: 40812470
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
melanomaOpen Targets
0.38Weak
cancerOpen Targets
0.38Weak
breast carcinomaOpen Targets
0.37Weak
alcohol drinkingOpen Targets
0.31Weak
clonal hematopoiesisOpen Targets
0.20Weak
hepatocellular carcinomaOpen Targets
0.10Suggestive
agingOpen Targets
0.09Suggestive
lung adenocarcinomaOpen Targets
0.07Suggestive
oral squamous cell carcinomaOpen Targets
0.05Suggestive
neoplasmOpen Targets
0.04Suggestive
breast benign neoplasmOpen Targets
0.04Suggestive
gliomaOpen Targets
0.04Suggestive
liver cancerOpen Targets
0.03Suggestive
glioblastoma multiformeOpen Targets
0.03Suggestive
schizophreniaOpen Targets
0.03Suggestive
posterior cortical atrophyOpen Targets
0.02Suggestive
pericarditisOpen Targets
0.02Suggestive
bladder transitional cell carcinomaOpen Targets
0.02Suggestive
prostate intraepithelial neoplasiaOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2AC11Shared pathway100%H3-3BProtein interaction100%H2AC18Protein interaction100%CENPAProtein interaction100%H2BC17Protein interaction100%SMARCA5Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
82%
Heart
58%
Lung
28%
Liver
25%
Ovary
24%
Gene Interaction Network
Click a node to explore
H2AZ2H2AC11H3-3BH2AC18CENPAH2BC17SMARCA5
PROTEIN STRUCTURE
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PDB3WAA · 3.20 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.06LoF Tolerant
pLIⓘ
0.20Tolerant
Observed/Expected LoF0.46 [0.23–1.06]
RankingsWhere H2AZ2 stands among ~20K protein-coding genes
  • #3,621of 20,598
    Most Researched129 · top quartile
  • #10,684of 17,882
    Most Constrained (LOEUF)1.06
Genes detectedH2AZ2
Sources retrieved3 papers
Response time—
📄 Sources
3
1
Comprehensive bioinformatic analysis reveals oncogenic role of H2A.Z isoforms in cervical cancer progression.
PMID: 35317119
Iran J Basic Med Sci · 2021
1.00
2
E2F and STAT3 provide transcriptional synergy for histone variant H2AZ activation to sustain glioblastoma chromatin accessibility and tumorigenicity.
PMID: 35058574
Cell Death Differ · 2022
0.67
3
Skin Epidermal Progenitor Maintenance by the SRCAP-H2A.Z Axis Downstream to Extracellular Signal-Regulated Kinase and mTOR Signaling.
PMID: 40812470
J Invest Dermatol · 2026
0.33