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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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H3-4
H3.4 histone, cluster member
Chromosome 1 · 1q42.13
NCBI Gene: 8290Ensembl: ENSG00000168148.4HGNC: HGNC:4778UniProt: Q16695
310PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
chromosome, telomeric regionprotein bindingnucleoplasmnucleosome assembly
✦AI Summary

H3.4 (H3-4) is a primate-specific histone variant that serves as a core component of nucleosomes, the fundamental protein-DNA complexes that package genomic DNA into chr1 1. Like canonical histones, H3.4 participates in transcription regulation, DNA repair, DNA replication, and chr1 stability by controlling DNA accessibility through nucleosome assembly and chr1 organization. The histone code—a complex set of post-translational modifications on H3.4 and other histones—regulates these critical cellular processes. H3.4 is unique to mammals and represents one of several primate-specific histone variants identified alongside other variants such as H3.5, H3.X, and H3.Y 1. Recent clinical evidence indicates that germline variants in H3.4-encoding genes can cause rare neurodevelopmental disorders classified as histonopathies, expanding understanding of histone function beyond normal cellular homeostasis 2. Additionally, H3.4 appears to participate in protein-protein interaction networks relevant to cancer progression pathways, particularly through interactions with epigenetic regulators like SETD7 3. These findings underscore H3.4's essential role in both normal chr1 regulation and disease pathogenesis when mutated.

Sources cited
1
H3.4 is a primate- or mammal-specific histone variant that serves as a core component of nucleosomes for packaging DNA and participating in transcription regulation and DNA repair
PMID: 33245240
2
Germline variants in H3-4 (HIST3H3) are associated with rare neurodevelopmental disorders classified as histonopathies
PMID: 40241305
3
H3.4 is involved in protein-protein interaction networks with epigenetic regulators like SETD7 that have roles in cancer progression
PMID: 38795259
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H3C13Shared pathway100%ATRXProtein interaction100%BRDTProtein interaction100%CHD4Protein interaction100%DAXXProtein interaction100%DNMT1Protein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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H3-4H3C13ATRXBRDTCHD4DAXXDNMT1
PROTEIN STRUCTURE
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PDB6WAU · 1.75 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.90LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.36 [0.82–1.90]
RankingsWhere H3-4 stands among ~20K protein-coding genes
  • #1,105of 20,598
    Most Researched310 · top 10%
  • #17,278of 17,882
    Most Constrained (LOEUF)1.90
Genes detectedH3-4
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Primate-specific histone variants.
PMID: 33245240
Genome · 2021
1.00
2
New azafluorenones with cytotoxic and carbonic anhydrase inhibitory properties: 2-Aryl-4-(4-hydroxyphenyl)-5H-indeno[1,2-b]pyridin-5-ones.
PMID: 30223148
Bioorg Chem · 2018
0.90
3
Tissue-specific expression of histone H3 variants diversified after species separation.
PMID: 26388943
Epigenetics Chromatin · 2015
0.88
4
Immunoaffinity purification of aromatase cytochrome P-450 from human placental microsomes, metabolic switching from aromatization to 1 beta and 2 beta-monohydroxylation, and recognition of aromatase isozymes.
PMID: 3142109
Steroids · 1987
0.84
5
B7-H3×4-1BB bispecific antibody augments antitumor immunity by enhancing terminally differentiated CD8
PMID: 33523913
Sci Adv · 2021
0.80