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GeneE
3 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
H3C13
H3 clustered histone 13
Chromosome 1 Β· 1q21.2
NCBI Gene: 653604Ensembl: ENSG00000183598.4HGNC: HGNC:20503UniProt: Q71DI3
51PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nucleosome assemblynucleoplasmnucleusprotein bindingviral diseaseinfectious diseasecancerbreast carcinoma
✦AI Summary

H3C13 encodes histone H3.2, a core component of nucleosomes that serves as a structural constituent of chr1 and participates in nucleosome assembly and chr1 organization 1. As a clustered histone variant, H3C13 is incorporated into chr1 to regulate gene expression through alterations in chr1 structure during cellular processes 1. The protein localizes to the nucleus and nucleoplasm where it binds nucleosomal DNA and facilitates heterochromatin formation [GO annotations]. H3C13 expression is dysregulated in multiple cancer types. In gastric cancer, H3C13 (along with H3C14) is significantly overexpressed in tumor tissues and cell lines compared to normal counterparts, with upregulation also evident in TCGA datasets 1. The differential expression of H3 variants alters the epigenomic landscape, contributing to aberrant gene expression patterns and cancer pathogenesis 1. In colorectal cancer research, H3C13 was identified as a direct interactor of SETD7, a histone methyltransferase, within a protein interaction network implicated in FOXO signaling and cancer progression 2. Additionally, H3C13 emerged as a core target gene in non-small cell lung cancer development following xylene exposure, potentially involved in cancer-related pathways including PI3K-Akt signaling 3. These findings indicate H3C13's role in epigenetic regulation with clinical relevance to cancer development and progression.

Sources cited
1
H3C13 (H3.2 gene) is overexpressed in gastric cancer tissues and cell lines; incorporation of H3 variants regulates gene expression via chromatin organization
PMID: 33727172
2
H3C13 is a direct interactor of SETD7 in protein-protein interaction networks involved in colorectal cancer progression through FOXO signaling
PMID: 38795259
3
H3C13 is identified as a core target gene in non-small cell lung cancer related to xylene exposure and cancer-related signaling pathways
PMID: 41824427
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
viral diseaseOpen Targets
0.51Moderate
infectious diseaseOpen Targets
0.50Moderate
cancerOpen Targets
0.37Weak
breast carcinomaOpen Targets
0.37Weak
melanomaOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
neoplasmOpen Targets
0.05Suggestive
urinary bladder carcinomaOpen Targets
0.03Suggestive
glioblastoma multiformeOpen Targets
0.02Suggestive
acute myeloid leukemiaOpen Targets
0.02Suggestive
systemic lupus erythematosusOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
gastric cancerOpen Targets
0.02Suggestive
influenzaOpen Targets
0.02Suggestive
acute lymphoblastic leukemiaOpen Targets
0.02Suggestive
diffuse intrinsic pontine gliomaOpen Targets
0.02Suggestive
adenocarcinomaOpen Targets
0.02Suggestive
rectum cancerOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
AnxietyOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
H3-4Shared pathway100%ATRXProtein interaction100%BRDTProtein interaction100%CHD3Protein interaction100%CHD4Protein interaction100%DAXXProtein interaction100%
Tissue Expression4 tissues
Lung
0%
Ovary
0%
Liver
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
H3C13H3-4ATRXBRDTCHD3CHD4DAXX
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt Q71DI3
View on AlphaFold β†—
RankingsWhere H3C13 stands among ~20K protein-coding genes
  • #8,684of 20,598
    Most Researched51
Genes detectedH3C13
Sources retrieved3 papers
Response timeβ€”
πŸ“„ Sources
3
1
Unravelling the molecular mechanistic pathway underlying the anticancer effects of kaempferol in colorectal cancer: a reverse pharmacology network approach.
PMID: 38795259
Mol Divers Β· 2025
1.00
2
Tumor-specific overexpression of histone gene, H3C14 in gastric cancer is mediated through EGFR-FOXC1 axis.
PMID: 33727172
Biochim Biophys Acta Gene Regul Mech Β· 2021
0.67
3
Elucidating the mechanistic association of xylene inducing non-small cell lung cancer through network toxicology and molecular docking analysis.
PMID: 41824427
PLoS One Β· 2026
0.33