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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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H4C6
H4 clustered histone 6
Chromosome 6 · 6p22.2
NCBI Gene: 8361Ensembl: ENSG00000158406.6HGNC: HGNC:20510UniProt: P62805
144PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Swiss-Prot Reviewed
infectious diseaseviral diseaseTessadori-Van Haaften neurodevelopmental syndrome 3Tessadori-Van Haaften neurodevelopmental syndrome 4
✦AI Summary

H4C6 (H4 clustered histone 6) encodes one of fourteen canonical histone H4 genes in humans that produce an invariant histone H4 protein, a core component of nucleosomes essential for chr6 organization and DNA processes including replication, transcription, and repair 1. As part of the histone octamer around which DNA wraps to form nucleosomes, H4C6 plays a fundamental role in chr6 structure and gene regulation 1. De novo missense variants in H4C6 and other H4 genes cause neurodevelopmental disorders characterized by intellectual disability and developmental delays, with variants clustering in regions important for protein-protein interactions with other histone subunits or chaperones 1. Beyond its structural role, H4C6 has emerged as a clinically relevant biomarker through DNA methylation analysis. Hypermethylation of H4C6 serves as a diagnostic biomarker for multiple cancers, including urothelial carcinoma (93% sensitivity when combined with TWIST1) 2, nasopharyngeal carcinoma (86% area under curve, improving to 95% when combined with SEPT9) 3, and lung cancer detection 4. H4C6 protein levels also correlate with bronchopulmonary dysplasia in preterm infants 5. The gene shows involvement in gene-environment interactions affecting brain phenotypes, particularly in response to air pollution exposure 6.

Sources cited
1
H4C6 encodes invariant histone H4 protein essential for nucleosome structure and de novo variants cause neurodevelopmental disorders
PMID: 35202563
2
H4C6/TWIST1 methylation assay shows 93% sensitivity for urothelial carcinoma diagnosis
PMID: 41874814
3
H4C6 hypermethylation serves as biomarker for nasopharyngeal carcinoma with 86% AUC, improving to 95% with SEPT9
PMID: 38115290
4
H4C6 methylation contributes to lung cancer detection model
PMID: 40847031
5
H4C6 protein levels correlate with bronchopulmonary dysplasia in preterm infants
PMID: 40098026
6
H4C6 shows gene-environment interactions affecting brain phenotypes, particularly with air pollution exposure
PMID: 41317394
Disease Associationsⓘ20
infectious diseaseOpen Targets
0.50Moderate
viral diseaseOpen Targets
0.50Moderate
Tessadori-Van Haaften neurodevelopmental syndrome 3Open Targets
0.46Moderate
Tessadori-Van Haaften neurodevelopmental syndrome 4Open Targets
0.43Moderate
breast carcinomaOpen Targets
0.39Weak
cancerOpen Targets
0.38Weak
melanomaOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
chronic lymphocytic leukemiaOpen Targets
0.22Weak
hepatocellular carcinomaOpen Targets
0.19Weak
lung adenocarcinomaOpen Targets
0.19Weak
gastric carcinomaOpen Targets
0.19Weak
small cell lung carcinomaOpen Targets
0.19Weak
diffuse large B-cell lymphomaOpen Targets
0.19Weak
gastric adenocarcinomaOpen Targets
0.19Weak
pancreatic ductal adenocarcinomaOpen Targets
0.19Weak
colorectal adenocarcinomaOpen Targets
0.18Weak
Extramammary Paget DiseaseOpen Targets
0.18Weak
female breast carcinomaOpen Targets
0.18Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
KMT5AProtein interaction100%HJURPProtein interaction100%H2BC17Protein interaction100%PRMT5Protein interaction100%H2BC12Protein interaction100%H2BC14Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Lung
63%
Ovary
36%
Bone Marrow
30%
Brain
23%
Heart
13%
Gene Interaction Network
Click a node to explore
H4C6KMT5AHJURPH2BC17PRMT5H2BC12H2BC14
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P62805
View on AlphaFold ↗
RankingsWhere H4C6 stands among ~20K protein-coding genes
  • #3,162of 20,598
    Most Researched144 · top quartile
Genes detectedH4C6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Recurrent de novo missense variants across multiple histone H4 genes underlie a neurodevelopmental syndrome.
PMID: 35202563
Am J Hum Genet · 2022
1.00
2
Proteomic analysis of premature umbilical cord blood and its relationship with bronchopulmonary dysplasia.
PMID: 40098026
Ital J Pediatr · 2025
0.90
3
Genome-Wide by Lifetime Environment Interaction Studies of Brain Imaging Phenotypes.
PMID: 41317394
Adv Sci (Weinh) · 2026
0.80
4
Diagnostic performance analysis of two-gene methylation in urothelial carcinoma based on small-volume urine sample.
PMID: 41874814
Cancer · 2026
0.70
5
SEPT9, H4C6, and RASSF1A methylation in nasopharyngeal swabs: A reflection of potential minimally invasive biomarkers for early screening of nasopharyngeal cancer.
PMID: 38115290
Medicine (Baltimore) · 2023
0.60