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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
HARS2
histidyl-tRNA synthetase 2, mitochondrial
Chromosome 5 Β· 5q31.3
NCBI Gene: 23438Ensembl: ENSG00000112855.17HGNC: HGNC:4817UniProt: A0A2R8Y5P7
66PubMed Papers
21Diseases
0Drugs
27Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
RNA bindinghistidine-tRNA ligase activityprotein bindingmitochondrionPerrault syndrome 2neurodegenerative diseasesensorineural hearing lossSensorineural hearing impairment
✦AI Summary

HARS2 encodes a mitochondrial histidyl-tRNA synthetase that catalyzes the ATP-dependent ligation of histidine to its cognate tRNA through formation of an aminoacyl-adenylate intermediate, essential for mitochondrial protein synthesis 1. The enzyme functions within the mitochondrial matrix to support mitochondrial translation by aminoacylating tRNAHis 2. HARS2 deficiency causes significant mitochondrial dysfunction, including reduced aminoacylation efficiency, altered tRNA metabolism, decreased oxidative phosphorylation complex activities, reduced ATP levels and membrane potential, and increased reactive oxygen species production 2. Pathogenic variants in HARS2 cause Perrault syndrome 2, characterized by bilateral sensorineural hearing loss and ovarian dysgenesis 13. The syndrome results from compound heterozygous mutations that reduce HARS2 aminoacylation activity, with affected individuals showing early-onset hearing impairment and primary ovarian insufficiency 13. HARS2 is also implicated in non-syndromic hearing loss, with mutations causing prelingual, progressive hearing loss affecting middle frequencies most severely 4. The gene represents one of several mitochondrial aminoacyl-tRNA synthetases linked to primary ovarian insufficiency, highlighting the critical role of mitochondrial translation in ovarian function 56.

Sources cited
1
HARS2 encodes mitochondrial histidyl-tRNA synthetase and mutations cause Perrault syndrome with ovarian dysgenesis and hearing loss
PMID: 21464306
2
HARS2 catalyzes histidine-tRNA aminoacylation and deficiency causes mitochondrial dysfunction including reduced ATP and increased ROS
PMID: 31819004
3
HARS2 mutations cause Perrault syndrome with bilateral sensorineural hearing loss and ovarian dysfunction
PMID: 34406847
4
HARS2 variants cause non-syndromic hearing loss with prelingual, progressive pattern
PMID: 39062730
5
HARS2 is among mitochondrial genes associated with primary ovarian insufficiency
PMID: 31393557
6
HARS2 is linked to syndromic primary ovarian insufficiency
PMID: 34794894
Disease Associationsβ“˜21
Perrault syndrome 2Open Targets
0.76Strong
neurodegenerative diseaseOpen Targets
0.42Moderate
sensorineural hearing lossOpen Targets
0.37Weak
Sensorineural hearing impairmentOpen Targets
0.37Weak
Perrault syndrome 1Open Targets
0.37Weak
Perrault syndromeOpen Targets
0.27Weak
genetic disorderOpen Targets
0.19Weak
deafnessOpen Targets
0.05Suggestive
autosomal recessive nonsyndromic hearing loss 9Open Targets
0.04Suggestive
autosomal dominant nonsyndromic hearing lossOpen Targets
0.04Suggestive
hearing loss, autosomal recessiveOpen Targets
0.03Suggestive
intelligenceOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.01Suggestive
myositisOpen Targets
0.01Suggestive
hearing lossOpen Targets
0.01Suggestive
polymyositisOpen Targets
0.01Suggestive
COVID-19Open Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
Charcot-Marie-Tooth diseaseOpen Targets
0.01Suggestive
AutoimmunityOpen Targets
0.01Suggestive
Perrault syndrome 2UniProt
Pathogenic Variants27
NM_012208.4(HARS2):c.475C>T (p.Arg159Ter)Pathogenic
not provided|Perrault syndrome 2|Gastric cancer
β˜…β˜…β˜†β˜†2025β†’ Residue 159
NM_012208.4(HARS2):c.1153_1165del (p.Ile385fs)Pathogenic
Perrault syndrome 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 385
NM_012208.4(HARS2):c.633+1G>ALikely pathogenic
not provided
β˜…β˜…β˜†β˜†2024
NM_012208.4(HARS2):c.324T>G (p.Tyr108Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 108
NM_012208.4(HARS2):c.1091A>G (p.Tyr364Cys)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 364
NM_012208.4(HARS2):c.586_587del (p.Met196fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 196
NM_012208.4(HARS2):c.183+1G>TLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_012208.4(HARS2):c.634-1G>TLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_012208.4(HARS2):c.928del (p.Tyr309_Leu310insTer)Pathogenic
Perrault syndrome 2
β˜…β˜†β˜†β˜†2025β†’ Residue 309
NM_012208.4(HARS2):c.281A>G (p.Asp94Gly)Likely pathogenic
Perrault syndrome 2
β˜…β˜†β˜†β˜†2025β†’ Residue 94
NM_012208.4(HARS2):c.13G>T (p.Gly5Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 5
NM_012208.4(HARS2):c.634-2A>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_012208.4(HARS2):c.1197+1G>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_012208.4(HARS2):c.1012G>A (p.Glu338Lys)Likely pathogenic
Perrault syndrome 2
β˜…β˜†β˜†β˜†2024β†’ Residue 338
NM_012208.4(HARS2):c.243_244insCTTT (p.Ile82fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 82
NM_012208.4(HARS2):c.229del (p.Ile77fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 77
NM_012208.4(HARS2):c.598C>G (p.Leu200Val)Likely pathogenic
Perrault syndrome 2|not provided|Perrault syndrome
β˜…β˜†β˜†β˜†2018β†’ Residue 200
NM_012208.4(HARS2):c.1403G>C (p.Gly468Ala)Likely pathogenic
Perrault syndrome 2
β˜…β˜†β˜†β˜†β†’ Residue 468
NM_012208.4(HARS2):c.1273C>T (p.Arg425Trp)Likely pathogenic
Perrault syndrome 2
β˜…β˜†β˜†β˜†β†’ Residue 425
NM_012208.4(HARS2):c.399+1G>ALikely pathogenic
Perrault syndrome 2
β˜†β˜†β˜†β˜†2021
View on ClinVar β†—
Related Genes
LARS1Protein interaction100%EPRS1Protein interaction100%MARS2Protein interaction95%SARS2Protein interaction93%PARS2Protein interaction93%HMOX2Protein interaction93%
Tissue Expression6 tissues
Heart
100%
Ovary
98%
Lung
80%
Liver
79%
Bone Marrow
72%
Brain
50%
Gene Interaction Network
Click a node to explore
HARS2LARS1EPRS1MARS2SARS2PARS2HMOX2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P49590
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.86LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.65 [0.49–0.86]
RankingsWhere HARS2 stands among ~20K protein-coding genes
  • #7,072of 20,598
    Most Researched66
  • #1,907of 5,498
    Most Pathogenic Variants27
  • #7,596of 17,882
    Most Constrained (LOEUF)0.86
Genes detectedHARS2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetics of ovarian insufficiency and defects of folliculogenesis.
PMID: 34794894
Best Pract Res Clin Endocrinol Metab Β· 2022
1.00
2
Novel Cases of Non-Syndromic Hearing Impairment Caused by Pathogenic Variants in Genes Encoding Mitochondrial Aminoacyl-tRNA Synthetases.
PMID: 39062730
Genes (Basel) Β· 2024
0.90
3
Mitochondrial Dysfunction in Primary Ovarian Insufficiency.
PMID: 31393557
Endocrinology Β· 2019
0.80
4
Expanding the Clinical and Molecular Spectrum of HARS2-Perrault Syndrome: Identification of a Novel Homozygous Missense Variant in the
PMID: 34406847
Genet Test Mol Biomarkers Β· 2021
0.70
5
Overexpression of mitochondrial histidyl-tRNA synthetase restores mitochondrial dysfunction caused by a deafness-associated tRNA
PMID: 31819004
J Biol Chem Β· 2020
0.60