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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HCFC2
host cell factor C2
Chromosome 12 · 12q23.3
NCBI Gene: 29915Ensembl: ENSG00000111727.13HGNC: HGNC:24972UniProt: Q9Y5Z7
45PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytosolprotein bindingnucleusnucleoplasmneurodegenerative diseaseatrial fibrillationvenous thromboembolismAlzheimer disease
✦AI Summary

HCFC2 (host cell factor C2) is a chr12-associated transcriptional regulator that plays distinct roles from its paralog HCF-1. HCFC2 functions as a component of histone methyltransferase complexes, specifically interacting with MLL through a conserved binding motif to regulate gene expression 1. Unlike HCF-1, HCFC2 localizes to nucleoli and inhibits cell proliferation while promoting differentiation gene expression programs 2. HCFC2 is essential for innate immune responses, facilitating IRF1 and IRF2 binding to promoters of interferon-regulated genes including TLR3, and is required for effective responses to viral infections such as influenza and herpes simplex virus 3. The protein can stabilize VP16-induced transcriptional complexes, though with reduced transcriptional activity compared to HCF-1 4. HCFC2 expression correlates with behavioral flexibility in reversal learning tasks, suggesting roles in neurological function 5. Clinically, HCFC2 mutations may increase susceptibility to infectious diseases 3, and the gene is included in prognostic signatures for lung adenocarcinoma 6 and is recurrently mutated in refractory multiple myeloma 7, indicating involvement in cancer progression and treatment resistance.

Sources cited
1
HCFC2 is a component of MLL histone methyltransferase complexes and interacts through a conserved binding motif
PMID: 15199122
2
HCFC2 localizes to nucleoli, inhibits cell proliferation, and promotes differentiation gene expression programs
PMID: 31049581
3
HCFC2 is essential for IRF1/IRF2-dependent transcription of interferon-regulated genes and antiviral responses
PMID: 28970238
4
HCFC2 can stabilize VP16-induced complexes but with reduced transcriptional activity compared to HCF-1
PMID: 11711630
5
HCFC2 expression correlates with reversal learning behavior in mice
PMID: 21392734
6
HCFC2 is part of an epigenetic signature for predicting survival in lung adenocarcinoma
PMID: 33221751
7
HCFC2 is recurrently mutated in refractory multiple myeloma
PMID: 35045690
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.30Weak
atrial fibrillationOpen Targets
0.27Weak
venous thromboembolismOpen Targets
0.02Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
viral diseaseOpen Targets
0.01Suggestive
colorectal carcinomaOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.00Suggestive
congenital heart diseaseOpen Targets
0.00Suggestive
infectionOpen Targets
0.00Suggestive
Miyoshi myopathyOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
Hereditary breast cancerOpen Targets
0.00Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.00Suggestive
thyroid cancer, nonmedullary, 1Open Targets
0.00Suggestive
urinary bladder cancerOpen Targets
0.00Suggestive
Uterine CarcinosarcomaOpen Targets
0.00Suggestive
uterine corpus endometrial carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HCFC1Protein interaction98%CREBZFProtein interaction97%CXXC1Protein interaction93%CREB3Protein interaction92%RBBP5Protein interaction92%KMT2BProtein interaction91%
Tissue Expression6 tissues
Ovary
100%
Heart
92%
Brain
82%
Bone Marrow
82%
Liver
72%
Lung
66%
Gene Interaction Network
Click a node to explore
HCFC2HCFC1CREBZFCXXC1CREB3RBBP5KMT2B
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9Y5Z7
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.26Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.15 [0.09–0.26]
RankingsWhere HCFC2 stands among ~20K protein-coding genes
  • #9,458of 20,598
    Most Researched45
  • #828of 17,882
    Most Constrained (LOEUF)0.26 · top 5%
Genes detectedHCFC2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
HCFC2 is needed for IRF1- and IRF2-dependent
PMID: 28970238
J Exp Med · 2017
1.00
2
Development and validation of a nomogram with an epigenetic signature for predicting survival in patients with lung adenocarcinoma.
PMID: 33221751
Aging (Albany NY) · 2020
0.90
3
Genetic dissection of behavioral flexibility: reversal learning in mice.
PMID: 21392734
Biol Psychiatry · 2011
0.80
4
Comprehensive genomic analysis of refractory multiple myeloma reveals a complex mutational landscape associated with drug resistance and novel therapeutic vulnerabilities.
PMID: 35045690
Haematologica · 2022
0.70
5
HCF-2 inhibits cell proliferation and activates differentiation-gene expression programs.
PMID: 31049581
Nucleic Acids Res · 2019
0.60