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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HES6
hes family bHLH transcription factor 6
Chromosome 2 · 2q37.3
NCBI Gene: 55502Ensembl: ENSG00000144485.12HGNC: HGNC:18254UniProt: Q96HZ4
43PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingsequence-specific double-stranded DNA bindingregulation of neurogenesisnucleusneoplasmprostate cancercolorectal carcinomacancer
✦AI Summary

HES6 is a bHLH transcription factor that functions as a modulator of Notch signaling, primarily by suppressing HES1-mediated transcriptional repression and promoting cell differentiation 1. Unlike canonical HES proteins, HES6 does not directly repress transcription but instead sequesters other HES proteins, inhibiting their repressor activity and allowing differentiation-promoting genes to be expressed 1. This mechanism facilitates neurogenesis by enabling proneural factors like ASCL1 to promote differentiation 1. HES6 is expressed during normal development in epithelial differentiation pathways, including airway mucociliary differentiation where it marks deuterosomal precursors of multiciliated cells 2, and in hematopoiesis where it supports differentiation into erythroid, lymphoid, and dendritic cell lineages 3. In disease, HES6 expression is significantly dysregulated: it is the most glioma-specific gene identified in large-scale analyses and supports glioma cell proliferation and migration 4. In uveal melanoma, HES6 drives an invasive, metastatic phenotype and is a validated therapeutic target, as HES6 depletion impairs proliferation, migration, and metastatic dissemination 5. HES6 is also upregulated in small cell lung cancer, particularly as a Notch pathway inhibitor in neuroendocrine tumors 6. These findings identify HES6 as both a critical developmental regulator and an emerging oncogenic driver in multiple cancer types.

Sources cited
1
HES6 sequesters other HES proteins rather than directly repressing transcription, and functions in neuronal differentiation by inhibiting HES-mediated repression
PMID: 21151987
2
HES6 marks deuterosomal precursor cells during airway mucociliary epithelial differentiation
PMID: 31558434
3
HES6 is expressed during hematopoietic differentiation and is required for erythroid, B cell, T cell, and plasmacytoid dendritic cell development; HES6 knockdown impairs hematopoietic engraftment
PMID: 38572564
4
HES6 is the most glioma-specific gene identified in transcriptomics analysis and supports glioma cell proliferation and migration
PMID: 21785461
5
HES6 drives metastatic disease in uveal melanoma; HES6 depletion impairs proliferation, migration, and metastatic dissemination in vitro and in vivo
PMID: 33462406
6
HES6 is upregulated in small cell lung cancer as a Notch-inhibiting gene in neuroendocrine cells
PMID: 37334524
Disease Associationsⓘ20
neoplasmOpen Targets
0.09Suggestive
prostate cancerOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
cancerOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
coronary artery diseaseOpen Targets
0.05Suggestive
Barrett's esophagusOpen Targets
0.04Suggestive
septic shockOpen Targets
0.04Suggestive
polycythemia veraOpen Targets
0.03Suggestive
gliomaOpen Targets
0.03Suggestive
glioblastoma multiformeOpen Targets
0.03Suggestive
ataxia telangiectasiaOpen Targets
0.03Suggestive
liver diseaseOpen Targets
0.03Suggestive
prostate neoplasmOpen Targets
0.02Suggestive
medulloblastomaOpen Targets
0.02Suggestive
Uveal MelanomaOpen Targets
0.02Suggestive
oligodendrogliomaOpen Targets
0.02Suggestive
astrocytomaOpen Targets
0.02Suggestive
Merkel cell skin cancerOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HES2Shared pathway100%HES3Shared pathway100%TLE1Protein interaction93%ASCL1Protein interaction84%MSCProtein interaction82%HELTShared pathway67%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
13%
Liver
5%
Lung
3%
Ovary
1%
Heart
1%
Gene Interaction Network
Click a node to explore
HES6HES2HES3TLE1ASCL1MSCHELT
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q96HZ4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.99LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF2.39 [1.47–1.99]
RankingsWhere HES6 stands among ~20K protein-coding genes
  • #9,741of 20,598
    Most Researched43
  • #17,830of 17,882
    Most Constrained (LOEUF)1.99
Genes detectedHES6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Dissecting the Single-Cell Transcriptome Network Underlying Gastric Premalignant Lesions and Early Gastric Cancer.
PMID: 31067475
Cell Rep · 2019
1.00
2
Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures.
PMID: 31558434
Development · 2019
0.90
3
Single-cell RNA sequencing reveals intratumoral heterogeneity in primary uveal melanomas and identifies HES6 as a driver of the metastatic disease.
PMID: 33462406
Cell Death Differ · 2021
0.80
4
Recent advances in understanding the role of HES6 in cancers.
PMID: 35673577
Theranostics · 2022
0.70
5
HES6 gene is selectively overexpressed in glioma and represents an important transcriptional regulator of glioma proliferation.
PMID: 21785461
Oncogene · 2012
0.60