HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
HKDC1
hexokinase domain containing 1
Chromosome 10 Β· 10q22.1
NCBI Gene: 80201Ensembl: ENSG00000156510.14HGNC: HGNC:23302UniProt: B3KT70
53PubMed Papers
21Diseases
0Drugs
6Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneKinase
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
glucokinase activityintracellular glucose homeostasisglucose 6-phosphate metabolic processmitochondrionretinitis pigmentosa 92Intrahepatic cholestasis of pregnancyShort staturegestational diabetes
✦AI Summary

HKDC1 (hexokinase domain containing 1) is a glucose phosphorylating enzyme with low catalytic activity compared to other hexokinases 1. Beyond canonical glucose metabolism, HKDC1 functions as a glucose sensor that modulates its stability in response to environmental glucose availability, enabling metabolic adaptation to glucose starvation by promoting mitochondrial fatty acid utilization 2. Mechanistically, HKDC1 exerts pleiotropic effects in cancer through multiple pathways. In hepatocellular carcinoma (HCC), HKDC1 promotes liver cancer stemness under hypoxia by stabilizing Ξ²-catenin through glycogen synthase kinase 3Ξ² interaction 3. HKDC1 facilitates immune evasion by coupling cytoskeleton protein ACTA2 to STAT1 activation and subsequent PD-L1 expression on tumor cells 4. In gastric cancer, HKDC1 reprograms lipid metabolism via an HKDC1/G3BP1-PRKDC regulatory axis to enhance metastasis and chemoresistance 5. Additionally, H. pylori infection upregulates HKDC1 to activate the TGF-Ξ²/Smad2 epithelial-mesenchymal transition pathway 6. In pancreatic adenocarcinoma, HKDC1 interacts with PARP1 to enhance autophagy and cell proliferation 7. Clinically, HKDC1 overexpression associates with poor prognosis and tumor metastasis across multiple cancer types 8. HKDC1 inhibition combined with anti-PD-L1 therapy enhances antitumor immunity 4, suggesting potential therapeutic utility.

Sources cited
1
HKDC1 has low glucose phosphorylating activity compared to other hexokinases
PMID: 30517626
2
HKDC1 functions as a glucose sensor that promotes metabolic adaptation and interacts with PHB2
PMID: 39375512
3
HKDC1 promotes liver cancer stemness under hypoxia through Ξ²-catenin stabilization and is specifically expressed in malignant cells
PMID: 39250463
4
HKDC1 promotes tumor immune evasion by coupling cytoskeleton to STAT1 activation and PD-L1 expression
PMID: 38351096
5
HKDC1 reprograms lipid metabolism in gastric cancer via HKDC1/G3BP1-PRKDC regulatory axis
PMID: 37423558
6
H. pylori upregulates HKDC1 to activate TGF-Ξ²/Smad2/EMT pathway in gastric cancer
PMID: 39545942
7
HKDC1 promotes autophagy and proliferation in pancreatic adenocarcinoma through PARP1 interaction
PMID: 39424110
8
HKDC1 is identified as a potential prognostic biomarker associated with metabolic reprogramming in intrahepatic cholangiocarcinoma
PMID: 34971568
Disease Associationsβ“˜21
retinitis pigmentosa 92Open Targets
0.45Moderate
Intrahepatic cholestasis of pregnancyOpen Targets
0.40Weak
Short statureOpen Targets
0.35Weak
gestational diabetesOpen Targets
0.33Weak
orofacial cleftOpen Targets
0.32Weak
cholestasis, intrahepatic, of pregnancy 3Open Targets
0.32Weak
liver diseaseOpen Targets
0.31Weak
diabetic ketoacidosisOpen Targets
0.30Weak
keratoconus 1Open Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.10Weak
gastric cancerOpen Targets
0.10Weak
cancerOpen Targets
0.09Suggestive
lung adenocarcinomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
pancreatic adenocarcinomaOpen Targets
0.08Suggestive
choroidal dystrophy, central areolar, 1Open Targets
0.07Suggestive
Barrett's esophagusOpen Targets
0.07Suggestive
X-linked retinal dysplasiaOpen Targets
0.07Suggestive
liver cancerOpen Targets
0.07Suggestive
Retinitis pigmentosa 92UniProt
Pathogenic Variants6
NM_025130.4(HKDC1):c.250G>A (p.Asp84Asn)Likely pathogenic
Retinitis pigmentosa 92
β˜…β˜†β˜†β˜†2024β†’ Residue 84
NM_025130.4(HKDC1):c.1250A>G (p.Tyr417Cys)Likely pathogenic
Retinitis pigmentosa 92
β˜…β˜†β˜†β˜†2024β†’ Residue 417
NM_025130.4(HKDC1):c.173C>T (p.Thr58Met)Likely pathogenic
Retinitis pigmentosa 92
β˜…β˜†β˜†β˜†β†’ Residue 58
NM_025130.4(HKDC1):c.2302C>T (p.Arg768Ter)Likely pathogenic
Nonsyndromic cleft lip palate
β˜†β˜†β˜†β˜†2016β†’ Residue 768
NM_025130.4(HKDC1):c.301G>T (p.Gly101Trp)Likely pathogenic
Short stature
β˜†β˜†β˜†β˜†2001β†’ Residue 101
NM_025130.4(HKDC1):c.1009C>T (p.Arg337Trp)Likely pathogenic
Short stature
β˜†β˜†β˜†β˜†2001β†’ Residue 337
View on ClinVar β†—
Related Genes
VDAC1Protein interaction100%G6PC3Protein interaction98%GNPDA2Protein interaction96%MGAM2Protein interaction94%GFPT1Protein interaction93%GFPT2Protein interaction93%
Tissue Expression6 tissues
Liver
100%
Lung
36%
Bone Marrow
13%
Brain
6%
Ovary
1%
Heart
0%
Gene Interaction Network
Click a node to explore
HKDC1VDAC1G6PC3GNPDA2MGAM2GFPT1GFPT2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q2TB90
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.81LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.65 [0.53–0.81]
RankingsWhere HKDC1 stands among ~20K protein-coding genes
  • #8,437of 20,598
    Most Researched53
  • #3,393of 5,498
    Most Pathogenic Variants6
  • #6,719of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedHKDC1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Proteogenomic characterization identifies clinically relevant subgroups of intrahepatic cholangiocarcinoma.
PMID: 34971568
Cancer Cell Β· 2022
1.00
2
HKDC1 promotes liver cancer stemness under hypoxia through stabilizing Ξ²-catenin.
PMID: 39250463
Hepatology Β· 2025
0.90
3
HKDC1 reprograms lipid metabolism to enhance gastric cancer metastasis and cisplatin resistance via forming a ribonucleoprotein complex.
PMID: 37423558
Cancer Lett Β· 2023
0.80
4
Helicobacter pylori promotes gastric cancer progression by activating the TGF-Ξ²/Smad2/EMT pathway through HKDC1.
PMID: 39545942
Cell Mol Life Sci Β· 2024
0.70
5
HKDC1 promotes tumor immune evasion in hepatocellular carcinoma by coupling cytoskeleton to STAT1 activation and PD-L1 expression.
PMID: 38351096
Nat Commun Β· 2024
0.60