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GeneE
28 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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HLA-DPA1
major histocompatibility complex, class II, DP alpha 1
Chromosome 6 Β· 6p21.32
NCBI Gene: 3113Ensembl: ENSG00000168384.11HGNC: HGNC:4938UniProt: P20036
178PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
positive regulation of T cell proliferationpeptide antigen bindingpositive regulation of T cell activationcellular response to type II interferon
✦AI Summary

HLA-DPA1 is a major histocompatibility complex class II alpha chain that forms heterodimers with HLA-DPB1 to present exogenous peptide antigens to CD4+ T cells 1. The protein binds peptides of 10-30 residues derived from endocytosed antigens and displays them on antigen-presenting cell surfaces, initiating adaptive immune responses through T cell activation and proliferation. Mechanistically, HLA-DPA1 associates with HLA-DPB1 and CD74 in the endoplasmic reticulum, then translocates to endosomal/lysosomal compartments where antigenic peptides are loaded following CD74 degradation and CLIP removal 1. The molecule stabilizes until high-affinity peptides bind, then transports to the cell membrane for T cell recognition. Genetic studies reveal HLA-DPA1 polymorphisms associate with multiple diseases. A variant (rs2856830) in the HLA-DPA1/DPB1 locus is associated with pulmonary arterial hypertension (PAH) susceptibility and survival outcomes, with C/C homozygotes showing doubled median survival (13.5 years) compared to T/T homozygotes (7.0 years) 2. Separately, rs13203715 causally associates with PAH through HLA-DPA1 downregulation in non-classical monocytes, promoting immune dysregulation and vascular remodeling 1. In ulcerative colitis, HLA-DPA1βˆ—01:03-DPB1βˆ—04:01 is a disease risk haplotype that engages NKp44 on epithelial cells, activating NK-mediated intestinal damage 3. Clinically, HLA-DPA1 overexpression in lung adenocarcinoma correlates with increased immune infiltration, reduced proliferation, and improved cisplatin sensitivity 4, suggesting therapeutic potential as a prognostic biomarker. Conversely, AML relapse after allogeneic transplantation features MHC class II downregulation including HLA-DPA1 (3-12 fold reduction), representing immune escape 5.

Sources cited
1
HLA-DPA1 is a major histocompatibility complex class II alpha chain that forms heterodimers with HLA-DPB1 to present exogenous peptide antigens to CD4+ T cells .
PMID: 40545078
2
A variant (rs2856830) in the HLA-DPA1/DPB1 locus is associated with pulmonary arterial hypertension (PAH) susceptibility and survival outcomes, with C/C homozygotes showing doubled median survival (13.5 years) compared to T/T homozygotes (7.0 years) .
PMID: 30527956
3
In ulcerative colitis, HLA-DPA1βˆ—01:03-DPB1βˆ—04:01 is a disease risk haplotype that engages NKp44 on epithelial cells, activating NK-mediated intestinal damage .
PMID: 37454979
4
Clinically, HLA-DPA1 overexpression in lung adenocarcinoma correlates with increased immune infiltration, reduced proliferation, and improved cisplatin sensitivity , suggesting therapeutic potential as a prognostic biomarker.
PMID: 37899135
5
Conversely, AML relapse after allogeneic transplantation features MHC class II downregulation including HLA-DPA1 (3-12 fold reduction), representing immune escape .
PMID: 30380364
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
HLA-DRAProtein interaction100%HLA-DQB1Protein interaction100%HLA-DRB1Protein interaction100%CD74Protein interaction99%CTSSProtein interaction99%HLA-BProtein interaction99%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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HLA-DPA1HLA-DRAHLA-DQB1HLA-DRB1CD74CTSSHLA-B
PROTEIN STRUCTURE
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PDB4P5M Β· 1.70 Γ… Β· X-ray
View on RCSB β†—
RankingsWhere HLA-DPA1 stands among ~20K protein-coding genes
  • #2,446of 20,598
    Most Researched178 Β· top quartile
Genes detectedHLA-DPA1
Sources retrieved28 papers
Response timeβ€”
πŸ“„ Sources
28β–Ό
1
Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis.
PMID: 30527956
Lancet Respir Med Β· 2019
1.00
2
Relationship between HLA-DPA1 genetic polymorphism and anembryonic pregnancy.
PMID: 31785132
Mol Genet Genomic Med Β· 2020
0.96
3
Relationship between HLA-DPA1 mRNA expression and susceptibility to hepatitis B.
PMID: 30267609
J Viral Hepat Β· 2019
0.92
4
Integrating single-cell RNA-seq, bulk RNA-seq, and Mendelian randomization to elucidate the role of HLA-DPA1 expression levels and non-classical monocytes in the pathogenesis of idiopathic pulmonary arterial hypertension.
PMID: 40545078
Int J Biol Macromol Β· 2025
0.90
5
Cytotoxic CD4
PMID: 37865091
Med Β· 2023
0.80