HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
30 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
HLA-E
major histocompatibility complex, class I, E
Chromosome 6 · 6p22.1
NCBI Gene: 3133Ensembl: ENSG00000204592.10HGNC: HGNC:4962UniProt: A0A4E9D3W4
358PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
antigen processing and presentation of exogenous peptide antigen via MHC class Ibprotein bindingbeta-2-microglobulin bindingMHC class I protein binding
✦AI Summary

HLA-E is a non-classical MHC class I molecule that serves as a critical immune checkpoint regulator, primarily functioning through interactions with NK cell receptors. HLA-E presents both self-peptides (particularly HLA class Ia leader peptides like VL9) and pathogen-derived peptides to the inhibitory CD94/NKG2A receptor complex on NK cells and CD8+ T cells, thereby suppressing their cytotoxic activity 123. This mechanism enables immune evasion in cancer, as circulating tumor cells exploit the HLA-E:CD94-NKG2A checkpoint to escape NK cell surveillance and facilitate metastasis 1. HLA-E also mediates antigen-specific NK cell memory responses against pathogens like HIV and influenza through the activating NKG2C receptor 4. Unlike classical MHC class I molecules, HLA-E exhibits distinctive intracellular trafficking patterns, being largely retained in the endoplasmic reticulum due to limited high-affinity peptide availability and rapid internalization once surface-expressed 5. Therapeutically, targeting HLA-E represents a promising immunotherapy approach, as blocking HLA-E interactions or disrupting its peptide processing through ERAP inhibition can restore NK cell and CD8+ T cell cytotoxicity against tumors 67. HLA-E's virtual monomorphism and resistance to HIV-mediated downregulation make it an attractive target for vaccine development, particularly for tuberculosis 8.

Sources cited
1
HLA-E:CD94-NKG2A checkpoint mediates circulating tumor cell evasion from NK surveillance
PMID: 36706761
2
HLA-E presents VL9 leader peptides and regulates NK cell cytotoxicity through NKG2A-C/CD94 interactions
PMID: 35347236
3
HLA-E presents peptides to both NKG2A/CD94 and T cell receptors with different recognition requirements
PMID: 40085431
4
HLA-E mediates antigen-specific NK cell memory responses through NKG2C receptor
PMID: 38064568
5
HLA-E exhibits distinctive trafficking patterns with ER retention and rapid surface internalization
PMID: 37140910
6
ERAP inhibition disrupts HLA-E peptide presentation and inactivates NKG2A checkpoint
PMID: 39561763
7
Monospecific anti-HLA-E antibodies can restore NK cell cytotoxicity by blocking CD94/NKG2A interaction
PMID: 31009335
8
HLA-E is monomorphic, HIV-resistant, and presents Mtb-specific peptides making it a vaccine target
PMID: 39790998
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TYROBPProtein interaction100%B2MProtein interaction100%CALRProtein interaction100%PDIA3Protein interaction100%IGHProtein interaction100%KIR2DS5Protein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
HLA-ETYROBPB2MCALRPDIA3IGHKIR2DS5
PROTEIN STRUCTURE
Preparing viewer…
PDB7P4B · 1.72 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.76LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.54 [0.40–0.76]
RankingsWhere HLA-E stands among ~20K protein-coding genes
  • #864of 20,598
    Most Researched358 · top 5%
  • #6,077of 17,882
    Most Constrained (LOEUF)0.76
Genes detectedHLA-E
Sources retrieved30 papers
Response time—
📄 Sources
30▼
1
Immune checkpoint HLA-E:CD94-NKG2A mediates evasion of circulating tumor cells from NK cell surveillance.
PMID: 36706761
Cancer Cell · 2023
1.00
2
Antigen-specific memory NK cell responses against HIV and influenza use the NKG2/HLA-E axis.
PMID: 38064568
Sci Immunol · 2023
0.90
3
Deciphering the HLA-E immunopeptidome with mass spectrometry: an opportunity for universal mRNA vaccines and T-cell-directed immunotherapies.
PMID: 39301027
Front Immunol · 2024
0.84
4
HLA-E-expressing macrophage polarization and increased NKG2A/CD94 expression in adult-onset Still's disease.
PMID: 38958876
Immunol Res · 2024
0.80
5
Intracellular trafficking of HLA-E and its regulation.
PMID: 37140910
J Exp Med · 2023
0.80