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GeneE
26 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
HMGA1
high mobility group AT-hook 1
Chromosome 6 · 6p21.31
NCBI Gene: 3159Ensembl: ENSG00000137309.21HGNC: HGNC:5010UniProt: A0A994J434
447PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of DNA-templated transcriptionpositive regulation of DNA-templated transcriptioncis-regulatory region sequence-specific DNA bindingoncogene-induced cell senescenceHIV infectionneurodegenerative diseasetype 2 diabetes mellitusatrial fibrillation
✦AI Summary

HMGA1 is a structural chr6 remodeling protein that binds preferentially to AT-rich DNA regions and functions as a transcriptional regulator with pleiotropic roles in development and cancer. Mechanistically, HMGA1 acts as an epigenetic gatekeeper by recruiting active histone marks (H3K4me3, H3K27Ac) to target gene promoters, thereby opening chr6 architecture and enhancing transcription 12. HMGA1 overexpression is characteristic of diverse malignant tumors including colorectal, pancreatic, esophageal, and prostate cancers 3245. In colorectal cancer, HMGA1 drives tumorigenesis by upregulating fatty acid synthase and enhancing lipid synthesis through transcriptional activation of SREBP1 3. In colon cancer, HMGA1 amplifies oncogenic Wnt signaling by upregulating the stem cell regulator ASCL2, promoting stem cell states while depleting differentiated enterocytes 1. In pancreatic cancer, HMGA1 induces FGF19 expression to promote both tumor growth and desmoplastic stroma formation 2. Conversely, HMGA1 suppresses anti-tumor immunity in esophageal cancer by inhibiting STING-mediated type I interferon secretion and impairing tumor-infiltrating lymphocyte recruitment 4. These findings establish HMGA1 as a critical oncogenic driver across multiple cancer types, suggesting it represents a viable therapeutic target.

Sources cited
1
HMGA1 promotes colorectal cancer progression by upregulating fatty acid synthase and enhancing lipid synthesis through SREBP1 activation
PMID: 39548107
2
HMGA1 acts as an epigenetic gatekeeper by recruiting active histone marks to upregulate ASCL2 and amplify Wnt signaling in colon tumorigenesis
PMID: 39895630
3
HMGA1 directly induces FGF19 expression by recruiting H3K4me3 and H3K27Ac marks, driving pancreatic cancer progression and desmoplastic stroma formation
PMID: 36919699
4
HMGA1 suppresses STING transcription in esophageal cancer by competing with CBP/p300, inhibiting type I interferon secretion and impairing anti-tumor immunity
PMID: 40456764
5
NAT10 acetylates HMGA1 mRNA, enhancing its stability and promoting prostate cancer cell proliferation and epithelial-mesenchymal transition
PMID: 38922788
6
HMGA1 overexpression is characteristic of various malignant tumors and chromosomal aberrations affecting HMGA1 occur in uterine leiomyomas, pulmonary chondroid hamartomas, and follicular thyroid adenomas
PMID: 15958792
7
Mediterranean diet components may modulate insulin resistance through involvement of nuclear HMGA1 protein in gene expression
PMID: 32290535
Disease Associationsⓘ20
HIV infectionOpen Targets
0.58Moderate
neurodegenerative diseaseOpen Targets
0.53Moderate
type 2 diabetes mellitusOpen Targets
0.48Moderate
atrial fibrillationOpen Targets
0.47Moderate
benign prostatic hyperplasiaOpen Targets
0.46Moderate
uterine fibroidOpen Targets
0.39Weak
head and neck squamous cell carcinomaOpen Targets
0.39Weak
hypertensionOpen Targets
0.38Weak
carcinoma of liver and intrahepatic biliary tractOpen Targets
0.37Weak
Abnormality of the skeletal systemOpen Targets
0.37Weak
smoking behaviorOpen Targets
0.35Weak
metabolic syndromeOpen Targets
0.33Weak
HypercalcemiaOpen Targets
0.32Weak
hepatocellular carcinomaOpen Targets
0.31Weak
non-small cell lung carcinomaOpen Targets
0.31Weak
psoriasisOpen Targets
0.30Weak
rheumatoid arthritisOpen Targets
0.29Weak
pancreatic ductal adenocarcinomaOpen Targets
0.29Weak
urinary bladder carcinomaOpen Targets
0.29Weak
papillary thyroid carcinomaOpen Targets
0.29Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes

No related genes found for this gene.

Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
Preparing viewer…
PDB8CPG · 1.40 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.43Moderately Constrained
pLIⓘ
0.97Intolerant
Observed/Expected LoF0.09 [0.03–0.43]
RankingsWhere HMGA1 stands among ~20K protein-coding genes
  • #621of 20,598
    Most Researched447 · top 5%
  • #2,352of 17,882
    Most Constrained (LOEUF)0.43 · top quartile
Genes detectedHMGA1
Sources retrieved26 papers
Response time—
📄 Sources
26▼
1
High mobility group A1 (HMGA1) promotes the tumorigenesis of colorectal cancer by increasing lipid synthesis.
PMID: 39548107
Nat Commun · 2024
1.00
2
Mediterranean Diet Nutrients to Turn the Tide against Insulin Resistance and Related Diseases.
PMID: 32290535
Nutrients · 2020
0.90
3
HMGA1-pseudogenes and cancer.
PMID: 26895108
Oncotarget · 2016
0.80
4
HMGA1 and MMP-11 Are Overexpressed in Human Non-melanoma Skin Cancer.
PMID: 29374701
Anticancer Res · 2018
0.72
5
NAT10 Promotes Prostate Cancer Growth and Metastasis by Acetylating mRNAs of HMGA1 and KRT8.
PMID: 38922788
Adv Sci (Weinh) · 2024
0.70