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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
HOXB1
homeobox B1
Chromosome 17 Β· 17q21.32
NCBI Gene: 3211Ensembl: ENSG00000120094.9HGNC: HGNC:5111UniProt: P14653
47PubMed Papers
21Diseases
0Drugs
3Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
RNA polymerase II cis-regulatory region sequence-specific DNA bindingRNA polymerase II transcription regulatory region sequence-specific DNA bindingDNA-binding transcription activator activity, RNA polymerase II-specificDNA bindingCongenital hereditary facial paralysis with variable hearing lossneurodegenerative diseasecongenital hereditary facial paralysis-variable hearing loss syndromeprostate carcinoma
✦AI Summary

HOXB1 is a sequence-specific transcription factor that functions as a developmental regulator providing cells with positional identities along the anterior-posterior body axis 1. As a homeodomain-containing protein, HOXB1 binds DNA regulatory regions containing TAATTA palindromic sites to activate transcription of target genes including Otx2 2. During embryogenesis, HOXB1 expression in the hindbrain is dynamically regulated through reciprocal repression with Egr2, establishing sharp segmental boundaries through coupling with retinoic acid signaling 3. HOXB1 cooperates with HOXA1 to specify rhombomere identities; double mutants exhibit severe hindbrain remodeling and craniofacial defects including loss of rhombomeres 4-5 and branchial arch tissues 4. Beyond developmental roles, HOXB1 functions as a tumor suppressor in glioma, where reduced expression correlates with malignancy and worse survival; miR-3175 directly suppresses HOXB1 to promote glioblastoma cell proliferation and invasion 5. Retinoic acid regulates spermiogenesis through HOXB1 and Sonic hedgehog signaling in testicular germ cells 6. Autosomal recessive HOXB1 mutations cause sensorineural hearing loss through defective efferent olivocochlear motor neuron development affecting outer hair cell survival 7. While HOXA1/HOXB1 variants showed no significant association with autism spectrum disorder in meta-analysis 8, the gene remains clinically relevant for hereditary congenital facial paresis.

Sources cited
1
HOXB1 acts as a developmental regulator providing positional identity along anterior-posterior axis and directs vertebral patterning and forelimb position
PMID: 36041259
2
HOXB1 is a sequence-specific transcription factor that binds TAATTA palindromic sites in the Otx2 regulatory region to activate transcription
PMID: 9556594
3
HOXB1 expression is dynamically regulated in hindbrain development through reciprocal repression with Egr2 and coupling with retinoic acid signaling
PMID: 30135723
4
HOXB1 cooperates with HOXA1 to specify rhombomere identities; double mutants show extensive hindbrain remodeling and severe craniofacial defects
PMID: 10529420
5
HOXB1 functions as a tumor suppressor in glioma; reduced expression promotes cell proliferation and invasion, and miR-3175 directly targets HOXB1
PMID: 26565624
6
Retinoic acid regulates late-stage spermatogenesis through HOXB1 and Sonic hedgehog signaling in testicular germ cells
PMID: 39080234
7
Autosomal recessive HOXB1 mutations cause sensorineural hearing loss through defective efferent motor neuron development affecting outer hair cell survival
PMID: 37738262
8
Meta-analysis of HOXB1 insertion variant showed no significant association with autism spectrum disorder risk
PMID: 21980499
Disease Associationsβ“˜21
Congenital hereditary facial paralysis with variable hearing lossOpen Targets
0.64Moderate
neurodegenerative diseaseOpen Targets
0.46Moderate
congenital hereditary facial paralysis-variable hearing loss syndromeOpen Targets
0.37Weak
prostate carcinomaOpen Targets
0.23Weak
genetic disorderOpen Targets
0.19Weak
keratoconusOpen Targets
0.12Weak
asthmaOpen Targets
0.10Weak
gliomaOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
dental cariesOpen Targets
0.06Suggestive
insomniaOpen Targets
0.06Suggestive
essential hypertensionOpen Targets
0.06Suggestive
Joubert syndromeOpen Targets
0.05Suggestive
lung cancerOpen Targets
0.05Suggestive
Hypomyelination neuropathy - arthrogryposisOpen Targets
0.04Suggestive
neuronopathy, distal hereditary motor, type 7BOpen Targets
0.04Suggestive
hypertensionOpen Targets
0.04Suggestive
Delayed pubertyOpen Targets
0.04Suggestive
Down syndromeOpen Targets
0.04Suggestive
acute myeloid leukemiaOpen Targets
0.03Suggestive
Facial paresis, hereditary congenital, 3UniProt
Pathogenic Variants3
NM_002144.4(HOXB1):c.620G>A (p.Arg207His)Pathogenic
Facial paresis, hereditary congenital, 3
β˜†β˜†β˜†β˜†2018β†’ Residue 207
NM_002144.4(HOXB1):c.66C>G (p.Tyr22Ter)Pathogenic
Facial paresis, hereditary congenital, 3
β˜†β˜†β˜†β˜†2018β†’ Residue 22
NM_002144.4(HOXB1):c.619C>T (p.Arg207Cys)Pathogenic
Facial paresis, hereditary congenital, 3
β˜†β˜†β˜†β˜†2012β†’ Residue 207
View on ClinVar β†—
Related Genes
CRAMP1Shared pathway100%PBX1Protein interaction100%KDM6BProtein interaction96%SUZ12Protein interaction96%KDM6AProtein interaction96%HOXA1Protein interaction96%
Tissue Expression6 tissues
Lung
100%
Heart
0%
Bone Marrow
0%
Ovary
0%
Liver
0%
Brain
0%
Gene Interaction Network
Click a node to explore
HOXB1CRAMP1PBX1KDM6BSUZ12KDM6AHOXA1
PROTEIN STRUCTURE
Preparing viewer…
PDB1B72 Β· 2.35 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.75LoF Tolerant
pLIβ“˜
0.05Tolerant
Observed/Expected LoF0.47 [0.31–0.75]
RankingsWhere HOXB1 stands among ~20K protein-coding genes
  • #9,217of 20,598
    Most Researched47
  • #4,070of 5,498
    Most Pathogenic Variants3
  • #5,924of 17,882
    Most Constrained (LOEUF)0.75
Genes detectedHOXB1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Transgenic human HOXB1-9 directs anterior-posterior axial skeleton pattern in Hoxb1-9 deficient mice.
PMID: 36041259
Differentiation Β· 2022
1.00
2
An integrated meta-analysis of two variants in HOXA1/HOXB1 and their effect on the risk of autism spectrum disorders.
PMID: 21980499
PLoS One Β· 2011
0.90
3
Regulatory interactions between the human HOXB1, HOXB2, and HOXB3 proteins and the upstream sequence of the Otx2 gene in embryonal carcinoma cells.
PMID: 9556594
J Biol Chem Β· 1998
0.80
4
Retinoic Acid Regulates Spermiogenesis Via Hoxb1 and Shh Signaling in Testicular Germ Cells.
PMID: 39080234
Reprod Sci Β· 2024
0.70
5
HOXB1 Is a Tumor Suppressor Gene Regulated by miR-3175 in Glioma.
PMID: 26565624
PLoS One Β· 2015
0.60