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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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HOXD9
homeobox D9
Chromosome 2 · 2q31.1
NCBI Gene: 3235Ensembl: ENSG00000128709.13HGNC: HGNC:5140UniProt: P28356
49PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase II transcription regulatory region sequence-specific DNA bindingnucleoplasmnucleolussequence-specific double-stranded DNA bindingneurodegenerative diseaseAbnormality of the skeletal systemgoutchronic kidney disease
✦AI Summary

HOXD9 is a sequence-specific transcription factor that plays critical roles in development and cancer progression. As a member of the homeobox gene family, HOXD9 provides cells with positional identity along the anterior-posterior axis during embryonic development and regulates transcription through RNA polymerase II-mediated mechanisms 1. In cancer contexts, HOXD9 functions as an oncogene across multiple malignancies. In gliomas, HOXD9 is highly expressed in tumor tissues and glioma cancer stem cells, where it promotes cell proliferation and survival 23. HOXD9 drives epithelial-mesenchymal transition (EMT) and metastasis through various pathways: it transcriptionally represses PAXIP1-AS1 in gastric cancer, leading to enhanced invasion via the PABPC1/PAK1 axis 1, and regulates miR-451a/PSMB8 signaling through PI3K/AKT pathways in anaplastic thyroid carcinoma 4. In cervical cancer, HOXD9 promotes metastasis by transcriptionally activating HMCN1 5. Additionally, HOXD9 contributes to diabetic kidney disease progression by promoting macrophage M1 polarization through the NF-κB pathway via APOC1 regulation 6. HOXD9 serves as a potential prognostic biomarker, with high expression correlating with poor outcomes and altered immune microenvironments in various cancers 7.

Sources cited
1
HOXD9 functions as a transcriptional repressor and regulates gastric cancer progression through PAXIP1-AS1/PABPC1/PAK1 signaling
PMID: 37225681
2
HOXD9 promotes anaplastic thyroid carcinoma progression via miR-451a/PSMB8 axis and PI3K/AKT signaling
PMID: 37974228
3
HOXD9/APOC1 axis promotes macrophage M1 polarization in diabetic kidney disease through NF-κB signaling
PMID: 39511608
4
HOXD9 is highly expressed in gliomas and glioma cancer stem cells, promoting cell proliferation and survival
PMID: 21600039
5
HOXD9 is a target of miR-205 and promotes glioma EMT and tumor growth
PMID: 30992394
6
HOXD9 serves as a prognostic biomarker in glioma with impacts on immune microenvironment
PMID: 37603105
7
HOXD9 promotes cervical cancer metastasis by transcriptionally activating HMCN1
PMID: 32414224
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.32Weak
Abnormality of the skeletal systemOpen Targets
0.19Weak
goutOpen Targets
0.16Weak
chronic kidney diseaseOpen Targets
0.10Weak
gastric cancerOpen Targets
0.10Weak
gliomaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.09Suggestive
androgenetic alopeciaOpen Targets
0.09Suggestive
hair colorOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
Ehlers-Danlos syndrome, musculocontractural typeOpen Targets
0.08Suggestive
autosomal recessive spondylocostal dysostosisOpen Targets
0.07Suggestive
Posterior fusion of lumbosacral vertebrae - blepharoptosisOpen Targets
0.07Suggestive
posterior fusion of lumbosacral vertebrae-blepharoptosis syndromeOpen Targets
0.07Suggestive
central nervous system cancerOpen Targets
0.07Suggestive
cholangiocarcinomaOpen Targets
0.07Suggestive
spondyloepiphyseal dysplasia tarda, Kohn typeOpen Targets
0.07Suggestive
symbrachydactyly of hands and feetOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HOXD10Protein interaction86%HOXD8Protein interaction81%HOXB9Shared pathway80%HOXC9Shared pathway80%HOXD11Protein interaction75%HOXD13Protein interaction72%
Tissue Expression6 tissues
Ovary
100%
Brain
29%
Lung
4%
Liver
1%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
HOXD9HOXD10HOXD8HOXB9HOXC9HOXD11HOXD13
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P28356
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.66LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.16 [0.82–1.66]
RankingsWhere HOXD9 stands among ~20K protein-coding genes
  • #8,955of 20,598
    Most Researched49
  • #15,925of 17,882
    Most Constrained (LOEUF)1.66
Genes detectedHOXD9
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The HOXD9-mediated PAXIP1-AS1 regulates gastric cancer progression through PABPC1/PAK1 modulation.
PMID: 37225681
Cell Death Dis · 2023
1.00
2
HOXD9/miR-451a/PSMB8 axis is implicated in the regulation of cell proliferation and metastasis via PI3K/AKT signaling pathway in human anaplastic thyroid carcinoma.
PMID: 37974228
J Transl Med · 2023
0.90
3
HOXD9/APOC1 axis promotes macrophage M1 polarization to exacerbate diabetic kidney disease progression through activating NF-κB signaling pathway.
PMID: 39511608
Hereditas · 2024
0.80
4
Functional analysis of HOXD9 in human gliomas and glioma cancer stem cells.
PMID: 21600039
Mol Cancer · 2011
0.70
5
Evaluation of HOTAIR, HOXD8, HOXD9, HOXD11 gene expression levels in Turkish patients with acute and chronic myeloid leukemia: A single center experience.
PMID: 39707783
Cell Mol Biol (Noisy-le-grand) · 2024
0.60