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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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HS3ST3B1
heparan sulfate-glucosamine 3-sulfotransferase 3B1
Chromosome 17 · 17p12
NCBI Gene: 9953Ensembl: ENSG00000125430.9HGNC: HGNC:5198UniProt: Q9Y662
25PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
[heparan sulfate]-glucosamine 3-sulfotransferase activityglycosaminoglycan biosynthetic processGolgi membraneplasma membraneneurodegenerative diseaseSplenomegalyretinal degenerationparalytic strabismus
✦AI Summary

HS3ST3B1 encodes a heparan sulfate 3-O-sulfotransferase that catalyzes the transfer of sulfate groups to glucosamine residues in heparan sulfate chains, utilizing 3'-phospho-5'-adenylyl sulfate (PAPS) as a sulfate donor. This enzyme specifically modifies IdoUA2S-GlcNS and IdoUA2S-GlcNH2 substrates, creating unique binding sites for viral pathogens including Herpes simplex virus-1. The enzyme plays complex roles in viral pathogenesis, demonstrating both pro- and anti-viral activities depending on the pathogen. HS3ST3B1 exhibits anti-viral effects against hepatitis B virus by inhibiting viral replication and reducing HBV RNA levels through mechanisms independent of direct promoter interaction 12. Conversely, genetic variants in HS3ST3B1 are associated with Plasmodium falciparum parasitaemia susceptibility, with specific SNPs affecting enzyme activity and promoter function 34. In cancer biology, HS3ST3B1 promotes angiogenesis and proliferation in acute myeloid leukemia by inducing VEGF expression and facilitating its shedding from cell surfaces, subsequently activating ERK and AKT signaling pathways 5. The enzyme has also been identified as a potential biomarker in multiple cancer types through genome-wide association studies 678.

Sources cited
1
HS3ST3B1 inhibits HBV replication and reduces HBV RNA levels
PMID: 22053370
2
HS3ST3B1 shows anti-viral activity against HBV replication through catalytic activity
PMID: 20705311
3
Genetic variants in HS3ST3B1 are associated with P. falciparum parasitaemia
PMID: 22475533
4
SNPs in HS3ST3B1 affect enzymatic activity and are linked to P. falciparum parasitaemia
PMID: 29718295
5
HS3ST3B1 promotes angiogenesis and proliferation in AML by inducing VEGF expression and activating ERK/AKT pathways
PMID: 25536282
6
HS3ST3B1 identified as potential biomarker for basal cell carcinoma
PMID: 39035989
7
HS3ST3B1 identified as novel locus associated with Fuchs corneal dystrophy
PMID: 38582945
8
HS3ST3B1 included in 6-gene signature for AML risk stratification
PMID: 39901703
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.31Weak
SplenomegalyOpen Targets
0.19Weak
retinal degenerationOpen Targets
0.19Weak
paralytic strabismusOpen Targets
0.17Weak
keratoconusOpen Targets
0.16Weak
Fuchs endothelial corneal dystrophyOpen Targets
0.16Weak
Fuchs' endothelial dystrophyOpen Targets
0.16Weak
post term pregnancyOpen Targets
0.13Weak
cutaneous melanomaOpen Targets
0.12Weak
idiopathic pulmonary fibrosisOpen Targets
0.12Weak
nephritisOpen Targets
0.12Weak
adolescent idiopathic scoliosisOpen Targets
0.12Weak
glomerulonephritisOpen Targets
0.10Weak
diabetes mellitusOpen Targets
0.09Suggestive
dominant beta-thalassemiaOpen Targets
0.06Suggestive
hemoglobin H diseaseOpen Targets
0.05Suggestive
hemoglobin D diseaseOpen Targets
0.05Suggestive
Hemoglobin C - beta-thalassemiaOpen Targets
0.05Suggestive
hemoglobin C-beta-thalassemia syndromeOpen Targets
0.05Suggestive
hemoglobin E diseaseOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SULT1B1Protein interaction83%SULT1C3Protein interaction83%SULT1C4Protein interaction83%HS3ST3A1Protein interaction76%HS3ST1Shared pathway67%HS3ST2Shared pathway67%
Tissue Expression6 tissues
Liver
100%
Ovary
17%
Lung
11%
Bone Marrow
8%
Heart
5%
Brain
4%
Gene Interaction Network
Click a node to explore
HS3ST3B1SULT1B1SULT1C3SULT1C4HS3ST3A1HS3ST1HS3ST2
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9Y662
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.55LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.94 [0.59–1.55]
RankingsWhere HS3ST3B1 stands among ~20K protein-coding genes
  • #12,994of 20,598
    Most Researched25
  • #15,422of 17,882
    Most Constrained (LOEUF)1.55
Genes detectedHS3ST3B1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
[Down-regulation of hepatitis B virus replication by heparin sulfate-D-glucosaminyl-3-O-sulfotransferase 3B1].
PMID: 22053370
Zhonghua Gan Zang Bing Za Zhi · 2011
1.00
2
Genetic variations in genes involved in heparan sulphate biosynthesis are associated with Plasmodium falciparum parasitaemia: a familial study in Burkina Faso.
PMID: 22475533
Malar J · 2012
0.90
3
Heparin sulphate D-glucosaminyl 3-O-sulfotransferase 3B1 plays a role in HBV replication.
PMID: 20705311
Virology · 2010
0.80
4
PTGES2 and RNASET2 identified as novel potential biomarkers and therapeutic targets for basal cell carcinoma: insights from proteome-wide mendelian randomization, colocalization, and MR-PheWAS analyses.
PMID: 39035989
Front Pharmacol · 2024
0.70
5
Literature-Guided 6-Gene Signature for the Stratification of High-Risk Acute Myeloid Leukemia.
PMID: 39901703
Cancer Res Treat · 2025
0.60