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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
IFT172
intraflagellar transport 172
Chromosome 2 Β· 2p23.3
NCBI Gene: 26160Ensembl: ENSG00000138002.16HGNC: HGNC:30391UniProt: A0A6Q8PGJ2
45PubMed Papers
23Diseases
0Drugs
157Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingextracellular vesiclecilium assemblyintraciliary transport particle Ashort-rib thoracic dysplasia 10 with or without polydactylyretinitis pigmentosa 71Bardet-Biedl syndrome 20Jeune syndrome
✦AI Summary

IFT172 is the largest component of the intraflagellar transport (IFT)-B complex required for primary cilia formation and maintenance 1. It facilitates bidirectional protein trafficking along cilia, essential for ciliary assembly and function 2. IFT172 plays an indirect role in hedgehog signaling, as cilia are required for all hedgehog pathway activity. Mutations in IFT172 cause diverse ciliopathies with variable severity. IFT172 deficiency leads to photoreceptor outer-segment protein mislocalization and rapid retinal degeneration, with complete photoreceptor loss within two months 2. The gene is associated with Bardet-Biedl syndrome 20, retinitis pigmentosa 71, and short-rib thoracic dysplasia 10 3. Recent evidence reveals IFT172 variants cause non-syndromic cholestatic liver disease 4 and autism-like behavioral phenotypes in mice 1. IFT172 haploinsufficiency impairs BDNF-TrkB signaling through transcription factor Gli3, reducing parvalbumin-expressing neurons and synaptic density 1. Additionally, IFT172 mutations may contribute to basal cell carcinoma development by disrupting ciliary-dependent hedgehog signaling 5. The gene's role extends beyond classical ciliopathies to neurodevelopmental and hepatobiliary disorders, expanding the clinical phenotypic spectrum of IFT172 mutations.

Sources cited
1
IFT172 is the largest IFT-B complex component; haploinsufficiency causes autism-like phenotypes through reduced BDNF-TrkB signaling via Gli3
PMID: 39265888
2
IFT172 depletion in photoreceptors causes rapid retinal degeneration with protein mislocalization and altered transducin translocation
PMID: 29659833
3
IFT172 mutations cause both isolated retinal degeneration and Bardet-Biedl syndrome through defective intraflagellar transport
PMID: 25168386
4
Biallelic IFT172 variants are associated with non-syndromic cholestatic liver disease in pediatric and adult patients
PMID: 37471416
5
IFT172 mutations may contribute to basal cell carcinoma by disrupting ciliary functions important for hedgehog signaling
PMID: 34674729
Disease Associationsβ“˜23
short-rib thoracic dysplasia 10 with or without polydactylyOpen Targets
0.81Strong
retinitis pigmentosa 71Open Targets
0.77Strong
Bardet-Biedl syndrome 20Open Targets
0.72Strong
Jeune syndromeOpen Targets
0.67Moderate
short-rib thoracic dysplasia 9 with or without polydactylyOpen Targets
0.64Moderate
Retinal dystrophyOpen Targets
0.51Moderate
short rib dysplasiaOpen Targets
0.51Moderate
retinitis pigmentosaOpen Targets
0.48Moderate
Bardet-Biedl syndromeOpen Targets
0.47Moderate
genetic disorderOpen Targets
0.45Moderate
Bardet-Biedl syndrome 22Open Targets
0.42Moderate
ciliopathyOpen Targets
0.38Weak
Joubert syndromeOpen Targets
0.35Weak
short-rib thoracic dysplasia 6 with or without polydactylyOpen Targets
0.27Weak
Intellectual disabilityOpen Targets
0.15Weak
optic atrophyOpen Targets
0.15Weak
nephronophthisisOpen Targets
0.14Weak
Neurodevelopmental disorderOpen Targets
0.12Weak
Bardet-Biedl syndrome 1Open Targets
0.11Weak
metabolic syndromeOpen Targets
0.10Suggestive
Bardet-Biedl syndrome 20UniProt
Retinitis pigmentosa 71UniProt
Short-rib thoracic dysplasia 10 with or without polydactylyUniProt
Pathogenic Variants157
NM_015662.3(IFT172):c.2365C>T (p.Arg789Ter)Pathogenic
not provided|Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly|Short-rib thoracic dysplasia 10 with or without polydactyly|Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly;Bardet-Biedl syndrome 20|Bardet-Biedl syndrome 20
β˜…β˜…β˜†β˜†2026β†’ Residue 789
NM_015662.3(IFT172):c.1525-1G>APathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71;Bardet-Biedl syndrome 20|Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|Bardet-Biedl syndrome 20|IFT172-related disorder|not provided
β˜…β˜…β˜†β˜†2026
NM_015662.3(IFT172):c.978dup (p.Glu327Ter)Pathogenic
Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly|Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly;Bardet-Biedl syndrome 20
β˜…β˜…β˜†β˜†2026β†’ Residue 327
NM_015662.3(IFT172):c.4868C>T (p.Thr1623Ile)Likely pathogenic
Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly|IFT172-related disorder|Retinitis pigmentosa 71;Bardet-Biedl syndrome 20;Short-rib thoracic dysplasia 10 with or without polydactyly
β˜…β˜…β˜†β˜†2025β†’ Residue 1623
NM_015662.3(IFT172):c.1342_1343del (p.Arg448fs)Pathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71
β˜…β˜…β˜†β˜†2025β†’ Residue 448
NM_015662.3(IFT172):c.112C>T (p.Arg38Ter)Pathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly|Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|not provided|IFT172-related disorder|Bardet-Biedl syndrome 20;Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71
β˜…β˜…β˜†β˜†2025β†’ Residue 38
NM_015662.3(IFT172):c.1036C>T (p.Arg346Ter)Pathogenic
not provided|Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71
β˜…β˜…β˜†β˜†2025β†’ Residue 346
NM_015662.3(IFT172):c.402+2T>GLikely pathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|Short-rib thoracic dysplasia 10 with or without polydactyly;Bardet-Biedl syndrome 20;Retinitis pigmentosa 71|IFT172-related disorder
β˜…β˜…β˜†β˜†2025
NM_015662.3(IFT172):c.5044C>T (p.Arg1682Ter)Pathogenic
Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly|Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly;Bardet-Biedl syndrome 20
β˜…β˜…β˜†β˜†2025β†’ Residue 1682
NM_015662.3(IFT172):c.4925_4928del (p.Arg1642fs)Pathogenic
Short-rib thoracic dysplasia 10 without polydactyly|Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|Short-rib thoracic dysplasia 10 with or without polydactyly;Bardet-Biedl syndrome 20;Retinitis pigmentosa 71
β˜…β˜…β˜†β˜†2025β†’ Residue 1642
NM_015662.3(IFT172):c.2765dup (p.Tyr922Ter)Pathogenic
Short-rib thoracic dysplasia 6 with or without polydactyly|Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|Short-rib thoracic dysplasia 10 with or without polydactyly;Bardet-Biedl syndrome 20;Retinitis pigmentosa 71|not provided|IFT172-related disorder
β˜…β˜…β˜†β˜†2024β†’ Residue 922
NM_015662.3(IFT172):c.4701C>A (p.His1567Gln)Pathogenic
Bardet-Biedl syndrome 20|Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly|IFT172-related disorder
β˜…β˜…β˜†β˜†2024β†’ Residue 1567
NM_015662.3(IFT172):c.3111+1G>TLikely pathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|not provided
β˜…β˜…β˜†β˜†2024
NM_015662.3(IFT172):c.5179T>C (p.Cys1727Arg)Pathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly|Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|Retinitis pigmentosa|Short-rib thoracic dysplasia 10 with or without polydactyly;Bardet-Biedl syndrome 20;Retinitis pigmentosa 71|IFT172-related disorder
β˜…β˜…β˜†β˜†2024β†’ Residue 1727
NM_015662.3(IFT172):c.455_462dup (p.Val155fs)Pathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|Bardet-Biedl syndrome 20;Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71
β˜…β˜…β˜†β˜†2024β†’ Residue 155
NM_015662.3(IFT172):c.1411+2T>CLikely pathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|Short-rib thoracic dysplasia 10 with or without polydactyly;Bardet-Biedl syndrome 20;Retinitis pigmentosa 71
β˜…β˜…β˜†β˜†2024
NM_015662.3(IFT172):c.2976-2A>TLikely pathogenic
Inborn genetic diseases|Bardet-Biedl syndrome 20;Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71
β˜…β˜…β˜†β˜†2024
NM_015662.3(IFT172):c.4914+1G>ALikely pathogenic
Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly|Bardet-Biedl syndrome 20;Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly
β˜…β˜…β˜†β˜†2024
NM_015662.3(IFT172):c.2456_2457del (p.Leu818_Phe819insTer)Pathogenic
Retinitis pigmentosa 71;Bardet-Biedl syndrome 20;Short-rib thoracic dysplasia 10 with or without polydactyly|Retinitis pigmentosa 71;Short-rib thoracic dysplasia 10 with or without polydactyly
β˜…β˜…β˜†β˜†2024β†’ Residue 818
NM_015662.3(IFT172):c.1871_1872del (p.Thr624fs)Pathogenic
Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71|Bardet-Biedl syndrome 20;Short-rib thoracic dysplasia 10 with or without polydactyly;Retinitis pigmentosa 71
β˜…β˜…β˜†β˜†2024β†’ Residue 624
View on ClinVar β†—
Related Genes
IFT22Protein interaction100%IFT140Protein interaction99%IFT38Protein interaction99%IFT54Protein interaction99%IFT20Protein interaction99%IFT70AProtein interaction99%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
44%
Heart
40%
Lung
26%
Brain
24%
Liver
22%
Gene Interaction Network
Click a node to explore
IFT172IFT22IFT140IFT38IFT54IFT20IFT70A
PROTEIN STRUCTURE
Preparing viewer…
PDB9H2D Β· 2.10 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.74LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.65 [0.56–0.74]
RankingsWhere IFT172 stands among ~20K protein-coding genes
  • #9,465of 20,598
    Most Researched45
  • #484of 5,498
    Most Pathogenic Variants157 Β· top 10%
  • #5,876of 17,882
    Most Constrained (LOEUF)0.74
Genes detectedIFT172
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 20301537
1.00
2
PMID: 20301590
0.90
3
Bayesian test for colocalisation between pairs of genetic association studies using summary statistics.
PMID: 24830394
PLoS Genet Β· 2014
0.80
4
PMID: 27336129
0.70
5
PMID: 20301500
0.60