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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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IGSF6
immunoglobulin superfamily member 6
Chromosome 16 · 16p12.2
NCBI Gene: 10261Ensembl: ENSG00000140749.10HGNC: HGNC:5953UniProt: O95976
11PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Swiss-Prot Reviewed
transmembrane signaling receptor activityimmune responsecell surface receptor signaling pathwayplasma membrane
✦AI Summary

IGSF6 (immunoglobulin superfamily member 6) is a transmembrane receptor belonging to the immunoglobulin superfamily, primarily expressed on immune cells including macrophages and dendritic cells 1. The gene spans approximately 10-12 kb with six exons and maps to chromosome 16-p12 1. IGSF6 functions as a cell surface signaling molecule involved in immune cell-cell interactions and recognition 2. Mechanistically, IGSF6 regulates anti-tumor macrophage activity, particularly M1 macrophage function. In lung adenocarcinoma, IGSF6 knockdown reduces M1 macrophage anti-tumor activity and promotes tumor progression 3. IGSF6 expression correlates positively with immune infiltration by anti-tumor immune cells, including CD8+ T cells and M1 macrophages 32. Clinical significance: IGSF6 exhibits diagnostic and prognostic value in multiple cancers. In lung adenocarcinoma, decreased IGSF6 expression associates with advanced TNM staging and poor survival 3. In mismatch repair-proficient colorectal cancer, high IGSF6 expression predicts improved sensitivity to immunotherapy and chemotherapy 2. In neuroblastoma, elevated IGSF6 correlates with improved event-free and overall survival 4. IGSF6 also appears relevant to inflammatory and metabolic diseases, identified as a hub gene shared between obesity and periodontitis pathogenesis 5. However, genetic variation in IGSF6 showed no association with inflammatory bowel disease susceptibility 6.

Sources cited
1
IGSF6 is an immunoglobulin superfamily member expressed in dendritic and myeloid cells; maps to IBD locus; gene structure with six exons spanning 10-12 kb
PMID: 11132146
2
IGSF6 genetic variation showed no association with inflammatory bowel disease in large patient cohorts
PMID: 12786995
3
IGSF6 is essential for anti-tumor activity of M1 macrophages in lung adenocarcinoma; decreased expression associates with advanced stages and poor survival; localizes to M1 macrophage membrane
PMID: 38037023
4
IGSF6 correlates with immune cell infiltration in colorectal cancer; high expression in MMR-proficient CRC predicts better immunotherapy and chemotherapy response
PMID: 37989761
5
IGSF6 identified as hub gene shared between obesity and periodontitis, involved in immune regulation and macrophage activity
PMID: 37063877
6
IGSF6 is a conserved immunoglobulin superfamily member on chromosome 16p12-13; differentially expressed during mouse embryonic development in lung and kidney
PMID: 16837177
7
IGSF6 identified as core gene in shared mechanisms between chronic gastritis and osteoporosis, involved in immune signaling pathways
PMID: 36973348
8
High IGSF6 expression among 6-gene tertiary lymphoid structure signature correlates with improved survival in neuroblastoma
PMID: 40718780
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MS4A2Shared pathway100%C17orf99Shared pathway100%FCRL6Shared pathway100%FCRLAShared pathway100%FCRL4Shared pathway100%METTL9Protein interaction97%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
IGSF6MS4A2C17orf99FCRL6FCRLAFCRL4METTL9
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt O95976
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.76LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.19 [0.79–1.76]
RankingsWhere IGSF6 stands among ~20K protein-coding genes
  • #16,786of 20,598
    Most Researched11
  • #16,406of 17,882
    Most Constrained (LOEUF)1.76
Genes detectedIGSF6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The mouse and human IGSF6 (DORA) genes map to the inflammatory bowel disease 1 locus and are embedded in an intron of a gene of unknown function.
PMID: 11132146
Immunogenetics · 2000
1.00
2
Genetic variation in the IGSF6 gene and lack of association with inflammatory bowel disease.
PMID: 12786995
Eur J Immunogenet · 2003
0.90
3
Immunoglobulin superfamily 6 is a molecule involved in the anti-tumor activity of macrophages in lung adenocarcinoma.
PMID: 38037023
BMC Cancer · 2023
0.80
4
IGSF6 is a novel biomarker to evaluate immune infiltration in mismatch repair-proficient colorectal cancer.
PMID: 37989761
Sci Rep · 2023
0.70
5
Transcriptomic analysis reveals shared gene signatures and molecular mechanisms between obesity and periodontitis.
PMID: 37063877
Front Immunol · 2023
0.60