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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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INPP5K
inositol polyphosphate-5-phosphatase K
Chromosome 17 Β· 17p13.3
NCBI Gene: 51763Ensembl: ENSG00000132376.21HGNC: HGNC:33882UniProt: B7Z4V9
62PubMed Papers
21Diseases
0Drugs
11Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
rufflenegative regulation of insulin receptor signaling pathwayruffle assemblynegative regulation of stress fiber assemblymuscular dystrophy, congenital, with cataracts and intellectual disabilityatrial fibrillationatrial fluttercongenital muscular dystrophy
✦AI Summary

INPP5K (inositol polyphosphate-5-phosphatase K) is a lipid phosphatase that hydrolyzes the 5-phosphate group from phosphoinositides, including PtdIns(4,5)P2 and PtdIns(3,4,5)P3 1. The protein contains an N-terminal catalytic domain and a C-terminal SKICH domain responsible for protein-protein interactions and subcellular localization, with predominant concentration in the endoplasmic reticulum 1. INPP5K regulates multiple cellular processes including insulin signaling, cytoskeletal organization, and membrane dynamics. It controls the structural conformation of receptors like IL-7R by modulating PtdIns(4,5)P2 levels, which affects receptor signaling and cellular differentiation 2. In neurons, INPP5K maintains the nonuniform distribution of ER-plasma membrane contacts, working upstream of Atlastin-1 to balance ER tubules and sheets 3. Biallelic mutations in INPP5K cause a rare autosomal recessive disorder characterized by congenital muscular dystrophy, cataracts, short stature, and intellectual disability 4. This condition shares molecular pathways with Marinesco-SjΓΆgren syndrome through dysregulation of PHGDH, suggesting potential therapeutic targets 4. INPP5K also functions as a tumor suppressor, with reduced expression associated with poor prognosis in liver cancer 56.

Sources cited
1
INPP5K hydrolyzes phosphoinositides and has N-terminal catalytic domain with C-terminal SKICH domain, concentrated in ER
PMID: 33060052
2
INPP5K controls IL-7R structure and signaling by modulating PtdIns(4,5)P2 levels
PMID: 36599086
3
INPP5K maintains nonuniform distribution of ER-plasma membrane contacts in neurons, working upstream of Atlastin-1
PMID: 34556534
4
Biallelic INPP5K mutations cause congenital muscular dystrophy with cataracts and intellectual disability, sharing pathways with Marinesco-SjΓΆgren syndrome
PMID: 33792664
5
Low INPP5K expression correlates with poor prognosis in liver cancer
PMID: 32420386
6
INPP5K functions as tumor suppressor gene with haploinsufficient mode of function
PMID: 26170120
Disease Associationsβ“˜21
muscular dystrophy, congenital, with cataracts and intellectual disabilityOpen Targets
0.79Strong
atrial fibrillationOpen Targets
0.43Moderate
atrial flutterOpen Targets
0.40Moderate
congenital muscular dystrophyOpen Targets
0.34Weak
congenital myopathyOpen Targets
0.34Weak
genetic disorderOpen Targets
0.34Weak
Sjogren syndromeOpen Targets
0.27Weak
neurodegenerative diseaseOpen Targets
0.25Weak
muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1Open Targets
0.15Weak
distal myopathyOpen Targets
0.12Weak
liver cancerOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
Genital neoplasm, femaleOpen Targets
0.06Suggestive
acute myeloid leukemiaOpen Targets
0.06Suggestive
leukemiaOpen Targets
0.05Suggestive
myeloperoxidase deficiencyOpen Targets
0.05Suggestive
nonimmune chronic idiopathic neutropenia of adultsOpen Targets
0.05Suggestive
X-linked severe congenital neutropeniaOpen Targets
0.05Suggestive
neutropenia, severe congenital, 2, autosomal dominantOpen Targets
0.05Suggestive
Blackfan-Diamond anemiaOpen Targets
0.05Suggestive
Muscular dystrophy, congenital, with cataracts and impaired intellectual developmentUniProt
Pathogenic Variants11
NM_016532.4(INPP5K):c.418G>A (p.Gly140Ser)Likely pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability|not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 140
NM_016532.4(INPP5K):c.653G>A (p.Trp218Ter)Likely pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜…β˜†β˜†β˜†2022β†’ Residue 218
NM_016532.4(INPP5K):c.925A>G (p.Ser309Gly)Likely pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜…β˜†β˜†β˜†2022β†’ Residue 309
NM_016532.4(INPP5K):c.1229_1230del (p.Phe410fs)Likely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2020β†’ Residue 410
NM_016532.4(INPP5K):c.67G>A (p.Val23Met)Pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜…β˜†β˜†β˜†β†’ Residue 23
NM_016532.4(INPP5K):c.165G>T (p.Leu55Phe)Pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜†β˜†β˜†β˜†2024β†’ Residue 55
NM_016532.4(INPP5K):c.753_756del (p.Arg251fs)Pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜†β˜†β˜†β˜†2024β†’ Residue 251
NM_016532.4(INPP5K):c.899A>G (p.Tyr300Cys)Pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜†β˜†β˜†β˜†2024β†’ Residue 300
NM_016532.4(INPP5K):c.277A>G (p.Met93Val)Pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜†β˜†β˜†β˜†2024β†’ Residue 93
NM_016532.4(INPP5K):c.805G>A (p.Asp269Asn)Pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜†β˜†β˜†β˜†2024β†’ Residue 269
NM_016532.4(INPP5K):c.1251_1252del (p.Asn417fs)Pathogenic
Congenital muscular dystrophy with cataracts and intellectual disability
β˜†β˜†β˜†β˜†2024β†’ Residue 417
View on ClinVar β†—
Related Genes
IPMKProtein interaction95%INPP5AProtein interaction92%ITPK1Protein interaction92%ITPKAProtein interaction92%ITPKBProtein interaction92%MINPP1Protein interaction92%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
92%
Heart
70%
Ovary
53%
Brain
50%
Liver
44%
Gene Interaction Network
Click a node to explore
INPP5KIPMKINPP5AITPK1ITPKAITPKBMINPP1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9BT40
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.11LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.84 [0.65–1.11]
RankingsWhere INPP5K stands among ~20K protein-coding genes
  • #7,469of 20,598
    Most Researched62
  • #2,775of 5,498
    Most Pathogenic Variants11
  • #11,419of 17,882
    Most Constrained (LOEUF)1.11
Genes detectedINPP5K
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
The phosphoinositide 5-phosphatase INPP5K: From gene structure to in vivo functions.
PMID: 33060052
Adv Biol Regul Β· 2021
0.90
3
Analysis of an independent tumor suppressor locus telomeric to Tp53 suggested Inpp5k and Myo1c as novel tumor suppressor gene candidates in this region.
PMID: 26170120
BMC Genet Β· 2015
0.80
4
INPP5K controls the dynamic structure and signaling of wild-type and mutated, leukemia-associated IL-7 receptors.
PMID: 36599086
Blood Β· 2023
0.70
5
INPP5K and SIL1 associated pathologies with overlapping clinical phenotypes converge through dysregulation of PHGDH.
PMID: 33792664
Brain Β· 2021
0.60