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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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IWS1
interacts with SUPT6H, CTD assembly factor 1
Chromosome 2 · 2q14.3
NCBI Gene: 55677Ensembl: ENSG00000163166.15HGNC: HGNC:25467UniProt: A0A1B0GW95
74PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription FactorTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingchromatin remodelingtranscription elongation-coupled chromatin remodelingnucleusneurodegenerative diseasedeep vein thrombosisheart diseaseThromboembolism
✦AI Summary

IWS1 is an essential transcription elongation factor that functions as a scaffold protein within the RNA polymerase II (RNAPII) elongation complex. The protein acts as an assembly factor that recruits various factors to the RNAPII elongation complex through its binding to the transcription elongation factor SPT6, which binds to the C-terminal domain of RNAPII 1. Structurally, IWS1 positions downstream DNA within the cleft of Pol II and globally stimulates RNA synthesis by increasing Pol II elongation velocity 2. The protein facilitates co-transcriptional processes by recruiting histone-modifying enzymes like SETD2 for H3K36 trimethylation, a chr2 mark of active transcription 3. IWS1 also coordinates mRNA processing and export by interacting with export factors 1. The protein contains a conserved TND-interacting motif (TIM) that enables specific interactions within the elongation machinery 4. Disease relevance includes overexpression in liposarcoma associated with poor outcomes, making it a potential therapeutic target 5. Additionally, IWS1 can participate in gene silencing complexes, as demonstrated in HIV latency where it associates with LEDGF/p75 and SPT6 to repress viral expression 6. Despite its essential nature, genetic studies show IWS1 can be bypassed through mutations affecting histone chaperones and chr2 modifiers 7.

Sources cited
1
IWS1 binds to SPT6 which associates with RNAPII CTD and facilitates mRNA export
PMID: 18513937
2
IWS1 positions downstream DNA in Pol II cleft and globally stimulates elongation velocity
PMID: 40835814
3
IWS1 recruits SETD2 for H3K36 trimethylation during transcription
PMID: 39666822
4
IWS1 contains TIM sequences for specific interactions in elongation machinery
PMID: 34822292
5
IWS1 overexpression associated with poor outcomes in liposarcoma
PMID: 40594510
6
IWS1 participates in gene silencing complex with LEDGF/p75 and SPT6 in HIV latency
PMID: 25590759
7
IWS1 is essential but can be bypassed by mutations in histone chaperones and chromatin modifiers
PMID: 35977387
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.49Moderate
deep vein thrombosisOpen Targets
0.34Weak
heart diseaseOpen Targets
0.33Weak
ThromboembolismOpen Targets
0.33Weak
Abnormal nasolacrimal system morphologyOpen Targets
0.28Weak
ThrombophlebitisOpen Targets
0.28Weak
PhlebitisOpen Targets
0.27Weak
pulmonary embolismOpen Targets
0.26Weak
Pulmonary InfarctionOpen Targets
0.25Weak
attention deficit hyperactivity disorderOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.09Suggestive
lung adenocarcinomaOpen Targets
0.08Suggestive
attention deficit-hyperactivity disorder 8Open Targets
0.07Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.07Suggestive
intellectual disability, autosomal recessive 59Open Targets
0.07Suggestive
movement disorderOpen Targets
0.07Suggestive
schizophrenia 15Open Targets
0.07Suggestive
Phelan-McDermid syndromeOpen Targets
0.05Suggestive
autismOpen Targets
0.05Suggestive
Tourette syndromeOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LEO1Protein interaction100%CDC73Protein interaction100%POLR2CProtein interaction99%POLR2AProtein interaction99%POLR2BProtein interaction99%POLR2EProtein interaction97%
Tissue Expression6 tissues
Heart
100%
Liver
100%
Lung
90%
Brain
86%
Bone Marrow
77%
Ovary
60%
Gene Interaction Network
Click a node to explore
IWS1LEO1CDC73POLR2CPOLR2APOLR2BPOLR2E
PROTEIN STRUCTURE
Preparing viewer…
PDB9EGX · 2.90 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.37Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.23 [0.15–0.37]
RankingsWhere IWS1 stands among ~20K protein-coding genes
  • #6,404of 20,598
    Most Researched74
  • #1,762of 17,882
    Most Constrained (LOEUF)0.37 · top 10%
Genes detectedIWS1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Structural basis of H3K36 trimethylation by SETD2 during chromatin transcription.
PMID: 39666822
Science · 2025
1.00
2
A ubiquitous disordered protein interaction module orchestrates transcription elongation.
PMID: 34822292
Science · 2021
0.90
3
Molecular docking and biological evaluation of a novel IWS1 inhibitor for the treatment of human retroperitoneal liposarcoma.
PMID: 40594510
Sci Rep · 2025
0.80
4
IWS1 positions downstream DNA to globally stimulate Pol II elongation.
PMID: 40835814
Nat Commun · 2025
0.70
5
The multi-tasking P-TEFb complex.
PMID: 18513937
Curr Opin Cell Biol · 2008
0.60