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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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KANSL1
KAT8 regulatory NSL complex subunit 1
Chromosome 17 Β· 17q21.31
NCBI Gene: 284058Ensembl: ENSG00000120071.15HGNC: HGNC:24565UniProt: A0A0G2JNB1
86PubMed Papers
1Diseases
0Drugs
125Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingnucleoplasmmitochondrionhistone acetyltransferase complexKoolen-De Vries syndrome
✦AI Summary

KANSL1 (KAT8 regulatory NSL complex subunit 1) is a non-catalytic component of the NSL histone acetyltransferase complex that mediates histone H4 acetylation at lysine-5 and lysine-8 (H4K5ac and H4K8ac) at transcription start sites, promoting transcription initiation 123. Beyond transcriptional regulation, KANSL1 regulates mitochondrial gene expression 4 and plays essential roles in spindle assembly and microtubule stability during mitosis 5. KANSL1 is critical for autophagy regulation, specifically modulating autophagosome-lysosome fusion through transcriptional control of STX17 6. KANSL1 haploinsufficiency causes Koolen-de Vries syndrome (KdVS), a rare neurodevelopmental disorder characterized by intellectual disability, cardiac dysfunction, hypotonia, and congenital malformations 67. A 17q21.31 duplication involving KANSL1 is associated with neurodevelopmental pathology 8, and functional regulatory variants in KANSL1 confer risk for progressive supranuclear palsy 9. Additionally, KAT6B/A::KANSL1 fusions drive a distinct uterine sarcoma entity with aggressive clinical potential 1011.

Sources cited
1
KANSL1 is a non-catalytic component of NSL complex mediating histone H4 acetylation at transcription start sites
PMID: 20018852
2
NSL complex promotes transcription initiation through histone H4 acetylation
PMID: 22547026
3
KANSL1 role in histone acetylation and transcription initiation
PMID: 33657400
4
NSL complex regulates mitochondrial gene expression
PMID: 27768893
5
KANSL1 plays essential role in spindle assembly and microtubule stability during mitosis
PMID: 26243146
6
KANSL1 modulates autophagosome-lysosome fusion and is essential for autophagy; KANSL1 haploinsufficiency causes Koolen-de Vries syndrome with neuronal and cardiac dysfunction
PMID: 35177641
7
KANSL1 mutations cause Koolen-de Vries syndrome characterized by intellectual disability, seizures, and cardiac/respiratory abnormalities
PMID: 39654190
8
17q21.31 duplication involving KANSL1 is associated with neurodevelopmental pathology
PMID: 39092588
9
KANSL1 functional regulatory variants confer risk for progressive supranuclear palsy
PMID: 35981026
10
KAT6B/A::KANSL1 fusion defines a distinct uterine sarcoma entity with clinical aggressiveness
PMID: 37307879
11
KAT6B/A::KANSL1 fusions characterize a potentially aggressive uterine sarcoma with unfavorable clinical course
PMID: 35575789
Disease Associationsβ“˜1
Koolen-De Vries syndromeUniProt
Pathogenic Variants125
NM_015443.4(KANSL1):c.1347G>A (p.Trp449Ter)Likely pathogenic
Koolen-de Vries syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 449
NM_015443.4(KANSL1):c.2284C>T (p.Arg762Ter)Pathogenic
See cases|Koolen-de Vries syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 762
NM_015443.4(KANSL1):c.1652+1G>APathogenic
Koolen-de Vries syndrome|not provided|Uterine corpus endometrial carcinoma|Squamous cell carcinoma of the head and neck
β˜…β˜…β˜†β˜†2025
NM_015443.4(KANSL1):c.868C>T (p.Arg290Ter)Pathogenic
not provided|Inborn genetic diseases|Koolen-de Vries syndrome|not specified|Congenital myopathy
β˜…β˜…β˜†β˜†2025β†’ Residue 290
NM_015443.4(KANSL1):c.3031C>T (p.Arg1011Ter)Pathogenic
Koolen-de Vries syndrome|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 1011
NM_015443.4(KANSL1):c.1042C>T (p.Arg348Ter)Pathogenic
Inborn genetic diseases|Koolen-de Vries syndrome|Intellectual disability|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 348
NM_015443.4(KANSL1):c.611dup (p.Met205fs)Pathogenic
Koolen-de Vries syndrome|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 205
NM_015443.4(KANSL1):c.2837+1G>APathogenic
Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2024
NM_015443.4(KANSL1):c.2938_2939del (p.Leu980fs)Pathogenic
Koolen-de Vries syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 980
NM_015443.4(KANSL1):c.779del (p.Gly260fs)Pathogenic
not provided|Koolen-de Vries syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 260
NM_015443.4(KANSL1):c.1288_1289del (p.Leu430fs)Pathogenic
not provided|Koolen-de Vries syndrome
β˜…β˜…β˜†β˜†2023β†’ Residue 430
NM_015443.4(KANSL1):c.1726C>T (p.Arg576Ter)Pathogenic
not provided|Koolen-de Vries syndrome
β˜…β˜…β˜†β˜†2023β†’ Residue 576
NM_015443.4(KANSL1):c.2020+1G>APathogenic
Koolen-de Vries syndrome|Inborn genetic diseases
β˜…β˜…β˜†β˜†2023
NM_015443.4(KANSL1):c.1816C>T (p.Arg606Ter)Pathogenic
Koolen-de Vries syndrome|not provided|Global developmental delay
β˜…β˜…β˜†β˜†2023β†’ Residue 606
NM_015443.4(KANSL1):c.916C>T (p.Gln306Ter)Pathogenic
Koolen-de Vries syndrome|Inborn genetic diseases
β˜…β˜…β˜†β˜†2023β†’ Residue 306
NM_015443.4(KANSL1):c.2470C>T (p.Arg824Ter)Pathogenic
not provided|Koolen-de Vries syndrome|KANSL1-related disorder
β˜…β˜…β˜†β˜†2023β†’ Residue 824
NM_015443.4(KANSL1):c.2821del (p.Gln941fs)Pathogenic
Koolen-de Vries syndrome|KANSL1-related disorder
β˜…β˜…β˜†β˜†2023β†’ Residue 941
NM_015443.4(KANSL1):c.1715dup (p.His572fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 572
NM_015443.4(KANSL1):c.2664_2666+10delinsTTGTAGAAGTPathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025
NM_015443.4(KANSL1):c.1337dup (p.Ser447fs)Likely pathogenic
Koolen-de Vries syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 447
View on ClinVar β†—
Related Genes
MTRES1Shared pathway100%EP400Protein interaction100%KAT5Protein interaction100%PHF20L1Protein interaction100%TRRAPProtein interaction98%RNF2Protein interaction97%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
KANSL1MTRES1EP400KAT5PHF20L1TRRAPRNF2
PROTEIN STRUCTURE
Preparing viewer…
PDB4CY1 Β· 1.50 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.33Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.23 [0.16–0.33]
RankingsWhere KANSL1 stands among ~20K protein-coding genes
  • #5,546of 20,598
    Most Researched86
  • #628of 5,498
    Most Pathogenic Variants125 Β· top quartile
  • #1,336of 17,882
    Most Constrained (LOEUF)0.33 Β· top 10%
Genes detectedKANSL1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A systematic review and pooled analysis of penetrance estimates of copy-number variants associated with neurodevelopment.
PMID: 39092588
Genet Med Β· 2025
1.00
2
Functional regulatory variants implicate distinct transcriptional networks in dementia.
PMID: 35981026
Science Β· 2022
0.90
3
Epigenetic regulation of
PMID: 37674294
Autophagy Β· 2024
0.80
4
The KAT6B::KANSL1 Fusion Defines a New Uterine Sarcoma With Hybrid Endometrial Stromal Tumor and Smooth Muscle Tumor Features.
PMID: 37307879
Mod Pathol Β· 2023
0.70
5
Transcriptome-directed analysis for Mendelian disease diagnosis overcomes limitations of conventional genomic testing.
PMID: 33001864
J Clin Invest Β· 2021
0.60