HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
KATNA1
katanin catalytic subunit A1
Chromosome 6 · 6q25.1
NCBI Gene: 11104Ensembl: ENSG00000186625.15HGNC: HGNC:6216UniProt: A8K7S5
65PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingprotein heterodimerization activitycytoplasmic microtubule organizationcytoplasmcomplicationgastrointestinal diseasemetabolic syndromeX-linked non-syndromic intellectual disability
✦AI Summary

KATNA1 encodes katanin p60, the catalytic subunit of a microtubule-severing complex that cleaves microtubules in an ATP-dependent manner 1. This severing activity is essential for microtubule reorganization during mitosis and neuronal development, facilitating poleward microtubule flux during mitosis and axonal growth through microtubule transport into neuronal processes 2. KATNA1 expression is tightly regulated at multiple levels: p53 acts as a transcriptional activator of KATNA1 3, while miR-124-3p provides posttranscriptional regulation 1, and the transcription factor Elk1 differentially regulates KATNA1 through both transcriptional and post-transcriptional mechanisms 4. Post-translationally, SUMOylation at lysine K330 enhances KATNA1 catalytic activity and promotes neurite outgrowth 2. Functionally, KATNA1 localizes to cytokinetic midbodies and functions in cytokinetic abscission through interactions with CHMP3 5. In ovarian cancer, elevated KATNA1 expression significantly correlates with improved overall survival 6, while altered KATNA1 levels have been associated with Alzheimer's disease pathology 7. These regulatory mechanisms ensure balanced KATNA1 expression critical for both cell survival and differentiation processes.

Sources cited
1
p53 is a transcriptional activator of KATNA1 gene expression
PMID: 31715301
2
miR-124-3p regulates p60-katanin posttranscriptionally and is important for neuronal branching
PMID: 37439368
3
SUMOylation of KATNA1 at K330 promotes microtubule severing and neurite outgrowth
PMID: 35868557
4
High KATNA1 expression correlates with increased overall survival in ovarian cancer patients
PMID: 30094535
5
KATNA1 localizes to cytokinetic midbodies through interaction with CHMP3 and functions in abscission
PMID: 36107470
6
Elk1 differentially regulates KATNA1 through both transcriptional and post-transcriptional mechanisms
PMID: 30789974
7
KATNA1 is identified as an interacting partner of DISC1 in Alzheimer's disease models
PMID: 34981809
Disease Associationsⓘ20
complicationOpen Targets
0.25Weak
gastrointestinal diseaseOpen Targets
0.25Weak
metabolic syndromeOpen Targets
0.07Suggestive
X-linked non-syndromic intellectual disabilityOpen Targets
0.06Suggestive
46,XX testicular disorder of sex developmentOpen Targets
0.06Suggestive
benign prostatic hyperplasiaOpen Targets
0.06Suggestive
familial male-limited precocious pubertyOpen Targets
0.06Suggestive
X-linked intellectual disability - macrocephaly - macroorchidismOpen Targets
0.06Suggestive
X-linked intellectual disability-macrocephaly-macroorchidism syndromeOpen Targets
0.06Suggestive
46,XX ovotesticular disorder of sex developmentOpen Targets
0.05Suggestive
46,XY complete gonadal dysgenesisOpen Targets
0.05Suggestive
Testicular regression syndromeOpen Targets
0.05Suggestive
breast cancerOpen Targets
0.05Suggestive
cryptorchidismOpen Targets
0.05Suggestive
hypogonadotropic hypogonadism 11 with or without anosmiaOpen Targets
0.04Suggestive
Testicular Germ Cell TumorOpen Targets
0.04Suggestive
non-small cell lung carcinomaOpen Targets
0.04Suggestive
partial chromosome Y deletionOpen Targets
0.04Suggestive
46,XY disorder of sex development due to isolated 17,20 lyase deficiencyOpen Targets
0.04Suggestive
spermatogenic failure 57Open Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LZTS2Protein interaction83%NDEL1Protein interaction81%KATNBL1Protein interaction74%KATNAL1Shared pathway67%KATNAL2Shared pathway67%KATNB1Protein interaction60%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
97%
Lung
84%
Heart
72%
Brain
56%
Liver
47%
Gene Interaction Network
Click a node to explore
KATNA1LZTS2NDEL1KATNBL1KATNAL1KATNAL2KATNB1
PROTEIN STRUCTURE
Preparing viewer…
PDB5ZQM · 2.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.75LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.55 [0.41–0.75]
RankingsWhere KATNA1 stands among ~20K protein-coding genes
  • #7,177of 20,598
    Most Researched65
  • #5,985of 17,882
    Most Constrained (LOEUF)0.75
Genes detectedKATNA1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
p53 regulates katanin-p60 promoter in HCT 116 cells.
PMID: 31715301
Gene · 2020
1.00
2
A potential posttranscriptional regulator for p60-katanin: miR-124-3p.
PMID: 37439368
Cytoskeleton (Hoboken) · 2023
0.90
3
SUMOylation of microtubule-cleaving enzyme KATNA1 promotes microtubule severing and neurite outgrowth.
PMID: 35868557
J Biol Chem · 2022
0.80
4
Clinical relevance of cytoskeleton associated proteins for ovarian cancer.
PMID: 30094535
J Cancer Res Clin Oncol · 2018
0.70
5
Comprehensive analysis of the human ESCRT-III-MIT domain interactome reveals new cofactors for cytokinetic abscission.
PMID: 36107470
Elife · 2022
0.60