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6 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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KCTD21
potassium channel tetramerization domain containing 21
Chromosome 11 · 11q14.1
NCBI Gene: 283219Ensembl: ENSG00000188997.9HGNC: HGNC:27452UniProt: Q4G0X4
19PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Tumor Suppressor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingidentical protein bindinghistone deacetylase bindingcullin family protein bindingnon-small cell lung carcinomasquamous cell carcinomahypertensionAbnormality of the skeletal system
✦AI Summary

KCTD21 functions as a substrate-specific adapter of the BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex that mediates ubiquitination and proteasomal degradation of target proteins, particularly HDAC1 1. As a member of the KCASH family, KCTD21 suppresses Hedgehog pathway signaling by promoting HDAC1 degradation, which keeps the transcription factor GLI1 acetylated and transcriptionally inactive 1. This mechanism is particularly relevant in medulloblastoma, where KCTD21 expression is epigenetically silenced or deleted; restoring KCTD21 expression reduces Hedgehog-dependent tumor growth 1. Beyond its canonical role, the KCTD21 antisense RNA (KCTD21-AS1) regulates non-small cell lung cancer progression through competitive inhibition of miR-519d-5p, which targets CD47 and TIPRL, thereby modulating macrophage phagocytosis and cancer cell autophagy 2. KCTD21-AS1 is also identified as a hub node in ceRNA regulatory networks associated with hypertensive nephropathy 3. Additionally, KCTD21 variants have been implicated in neurodevelopmental disorders, including autism spectrum disorder and schizophrenia 4. Recent analyses indicate KCTD21 downregulation in ovarian cancer, suggesting potential tumor-suppressive roles 5.

Sources cited
1
KCTD21 (KCASH2) mediates HDAC1 ubiquitination and degradation, suppresses Hedgehog signaling, and inhibits medulloblastoma growth
PMID: 21472142
2
KCTD21-AS1 lncRNA regulates NSCLC proliferation and metastasis through miR-519d-5p, affecting CD47 and TIPRL expression
PMID: 38383737
3
KCTD21-AS1 is a hub node in ceRNA regulatory network associated with hypertensive nephropathy
PMID: 33176720
4
KCTD21 variants are implicated in autism spectrum disorder and associated with schizophrenia
PMID: 28720891
5
KCTD21 is downregulated in ovarian cancer and associated with cancer progression
PMID: 40832836
Disease Associationsⓘ20
non-small cell lung carcinomaOpen Targets
0.07Suggestive
squamous cell carcinomaOpen Targets
0.06Suggestive
hypertensionOpen Targets
0.04Suggestive
Abnormality of the skeletal systemOpen Targets
0.04Suggestive
Testicular Germ Cell TumorOpen Targets
0.04Suggestive
response to statinOpen Targets
0.03Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.02Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
Abnormality of the gastrointestinal tractOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
lung cancerOpen Targets
0.01Suggestive
medulloblastomaOpen Targets
0.01Suggestive
Mobius syndromeOpen Targets
0.01Suggestive
tuberculosisOpen Targets
0.01Suggestive
acute lymphoblastic leukemiaOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
Intellectual disabilityOpen Targets
0.00Suggestive
schizophreniaOpen Targets
0.00Suggestive
meningococcal infectionOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
KCTD6Shared pathway73%CYB561D1Protein interaction73%HERC4Shared pathway50%KCTD10Shared pathway40%KCTD1Shared pathway40%KCTD4Shared pathway33%
Tissue Expression6 tissues
Liver
100%
Brain
49%
Ovary
45%
Lung
33%
Heart
32%
Bone Marrow
4%
Gene Interaction Network
Click a node to explore
KCTD21KCTD6CYB561D1HERC4KCTD10KCTD1KCTD4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q4G0X4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.12LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.64 [0.39–1.12]
RankingsWhere KCTD21 stands among ~20K protein-coding genes
  • #14,453of 20,598
    Most Researched19
  • #11,611of 17,882
    Most Constrained (LOEUF)1.12
Genes detectedKCTD21
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
m6A-methylated KCTD21-AS1 regulates macrophage phagocytosis through CD47 and cell autophagy through TIPR.
PMID: 38383737
Commun Biol · 2024
1.00
2
Identification of biomarkers and pathways in hypertensive nephropathy based on the ceRNA regulatory network.
PMID: 33176720
BMC Nephrol · 2020
0.83
3
Identification and characterization of KCASH2 and KCASH3, 2 novel Cullin3 adaptors suppressing histone deacetylase and Hedgehog activity in medulloblastoma.
PMID: 21472142
Neoplasia · 2011
0.67
4
Whole exome sequencing reveals inherited and de novo variants in autism spectrum disorder: a trio study from Saudi families.
PMID: 28720891
Sci Rep · 2017
0.50
5
Mechanistic Insights Into the Tumor-Driving and Diagnostic Roles of KCTD Family Genes in Ovarian Cancer: An Integrated In Silico and In Vitro Analysis.
PMID: 40832836
Cancer Med · 2025
0.33