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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
KDF1
keratinocyte differentiation factor 1
Chromosome 1 Β· 1p36.11
NCBI Gene: 126695Ensembl: ENSG00000175707.11HGNC: HGNC:26624UniProt: Q8NAX2
13PubMed Papers
21Diseases
0Drugs
4Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingregulation of epidermal cell divisionmorphogenesis of embryonic epitheliumpositive regulation of epidermal cell differentiationautosomal dominant hypohidrotic ectodermal dysplasiagouttooth agenesisHypodontia
✦AI Summary

KDF1 (keratinocyte differentiation factor 1) is a developmental regulator essential for ectodermal derivative formation, particularly dental and epithelial development. Functionally, KDF1 acts as a negative regulator of epithelial cell proliferation while promoting differentiation, maintaining the critical balance between these processes 1. At the molecular level, KDF1 modulates dental epithelial cell proliferation through the PI3K/AKT/mTOR signaling pathway 2, and suppresses canonical Wnt signaling activation 3. Clinically, KDF1 variants cause two distinct phenotypes: non-syndromic tooth agenesis (NSTA), characterized by missing teeth averaging 15 per individual 4, and hypohidrotic ectodermal dysplasia with broader ectodermal involvement affecting hair, nails, and teeth 1. Genotype-phenotype correlations reveal that variants clustered in the DUF4656 domain (amino acids 251-275) associate with ectodermal dysplasia, while variants in amino- or carboxy-terminal regions cause isolated tooth agenesis 4. Beyond tooth number, KDF1 mutations produce specific dental morphological defects including abnormal enamel structure with reduced mineralization, altered crystal ordering, and blunted molar cusps 52, alongside oral epithelial dyskeratosis 3. These findings establish KDF1 as a critical regulator of human dental development and ectodermal differentiation.

Sources cited
1
KDF1 variants cause non-syndromic tooth agenesis with genotype-phenotype correlations; variants in DUF4656 domain associate with ectodermal dysplasia while terminal variants cause isolated tooth agenesis
PMID: 38501196
2
Kdf1 regulates molar cusp morphogenesis through PI3K/AKT/mTOR signaling pathway; loss of epithelial Kdf1 causes rounded and blunt molar cusps
PMID: 40739677
3
KDF1 variants suppress canonical Wnt signaling activation and cause dental morphological anomalies and keratinized gingival epithelium abnormalities including epithelial dyskeratosis and impaired differentiation
PMID: 36293320
4
Kdf1 mutations produce enamel structure defects with reduced mineral density, abnormally shaped prism structure, altered crystal ordering, and compromised enamel quality
PMID: 36831017
5
KDF1 is mutated in autosomal dominant hypohidrotic ectodermal dysplasia; Kdf1-/- mice recapitulate the ectodermal phenotype with abnormal balance towards proliferation at expense of differentiation
PMID: 27838789
Disease Associationsβ“˜21
autosomal dominant hypohidrotic ectodermal dysplasiaOpen Targets
0.52Moderate
goutOpen Targets
0.33Weak
tooth agenesisOpen Targets
0.30Weak
HypodontiaOpen Targets
0.29Weak
genetic disorderOpen Targets
0.19Weak
essential hypertensionOpen Targets
0.14Weak
type 2 diabetes mellitusOpen Targets
0.12Weak
neoplasmOpen Targets
0.10Suggestive
cancerOpen Targets
0.08Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.08Suggestive
ovarian cancerOpen Targets
0.07Suggestive
lung adenocarcinomaOpen Targets
0.07Suggestive
metabolic diseaseOpen Targets
0.07Suggestive
hair colorOpen Targets
0.07Suggestive
Pilonidal abscessOpen Targets
0.06Suggestive
anodontiaOpen Targets
0.04Suggestive
colorectal adenocarcinomaOpen Targets
0.04Suggestive
cervical cancerOpen Targets
0.04Suggestive
autosomal recessive omodysplasiaOpen Targets
0.03Suggestive
autosomal dominant omodysplasiaOpen Targets
0.03Suggestive
Ectodermal dysplasia 12, hypohidrotic/hair/tooth/nail typeUniProt
Pathogenic Variants4
NM_152365.3(KDF1):c.753C>G (p.Phe251Leu)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 251
NM_152365.3(KDF1):c.845T>G (p.Ile282Ser)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 282
NM_152365.3(KDF1):c.727A>C (p.Ile243Leu)Likely pathogenic
Hypodontia
β˜…β˜†β˜†β˜†β†’ Residue 243
NM_152365.3(KDF1):c.753C>A (p.Phe251Leu)Pathogenic
Ectodermal dysplasia 12, hypohidrotic/hair/tooth/nail type
β˜†β˜†β˜†β˜†2017β†’ Residue 251
View on ClinVar β†—
Related Genes
RAB25Protein interaction72%HRNRShared pathway33%FLG2Shared pathway25%CYSRT1Shared pathway25%DMBX1Shared pathway20%TMEM79Shared pathway20%
Tissue Expression6 tissues
Brain
100%
Liver
94%
Lung
52%
Bone Marrow
16%
Ovary
2%
Heart
2%
Gene Interaction Network
Click a node to explore
KDF1RAB25HRNRFLG2CYSRT1DMBX1TMEM79
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8NAX2
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.57Moderately Constrained
pLIβ“˜
0.85Intermediate
Observed/Expected LoF0.34 [0.21–0.57]
RankingsWhere KDF1 stands among ~20K protein-coding genes
  • #16,199of 20,598
    Most Researched13
  • #3,875of 5,498
    Most Pathogenic Variants4
  • #3,742of 17,882
    Most Constrained (LOEUF)0.57 Β· top quartile
Genes detectedKDF1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Tooth agenesis related to a novel KDF1 variant: A case report and literature review.
PMID: 38501196
Oral Dis Β· 2024
1.00
2
Identification of a novel missense heterozygous mutation in the KDF1 gene for non-syndromic congenital anodontia.
PMID: 35641834
Clin Oral Investig Β· 2022
0.90
3
Tooth agenesis: What do we know and is there a connection to cancer?
PMID: 33249565
Clin Genet Β· 2021
0.80
4
Kdf1 Regulates Molar Cusp Morphogenesis via the PI3K/AKT/mTOR Signalling Axis.
PMID: 40739677
Cell Prolif Β· 2026
0.70
5
PMID: 36293320
Int J Mol Sci Β· 2022
0.60