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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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KDM4A
lysine demethylase 4A
Chromosome 1 · 1p34.2-p34.1
NCBI Gene: 9682Ensembl: ENSG00000066135.14HGNC: HGNC:22978UniProt: O75164
136PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of gene expressionnegative regulation of DNA-templated transcriptionnucleoplasmnucleusneurodegenerative diseasemathematical abilitysubstance-related disorderintelligence
✦AI Summary

KDM4A (lysine demethylase 4A) is a histone demethylase that removes repressive H3K9me3 marks to regulate gene expression and chr1 accessibility 1. The enzyme localizes to telomeric repeats and maintains telomere integrity by regulating H3K9me3 levels at telomeres, with inhibition causing telomeric dysfunction and genomic instability 2. KDM4A promotes cellular senescence through multiple pathways: it upregulates AGT expression via H3K9me3 demethylation, leading to disrupted mitophagy and activation of cGAS-STING signaling 3, and contributes to cardiac fibrosis by promoting premature senescence in fibroblasts through Trim44-mediated autophagy suppression 4. In cancer, KDM4A exhibits context-dependent effects - it can promote tumor growth in squamous cell carcinoma, where its inhibition induces DNA replication stress and activates tumor-intrinsic immunity 5, and in bladder cancer by regulating cholesterol synthesis and oxidative stress balance 6. However, in colorectal cancer, KDM4A-induced senescence enhances immunotherapy efficacy by promoting CD8+ T-cell infiltration 3. KDM4A protein levels are posttranscriptionally elevated in acute myeloid leukemia samples with IDH1/2 mutations 7, highlighting its significance as a therapeutic target across multiple malignancies.

Sources cited
1
KDM4A is a histone demethylase that removes H3K9me3 marks and plays important roles in gene expression and cancer
PMID: 25633974
2
KDM4A localizes to telomeric repeats, regulates H3K9me3 at telomeres, and its inhibition causes telomeric dysfunction
PMID: 40498073
3
KDM4A promotes cellular senescence by upregulating AGT through H3K9me3 demethylation and activating cGAS-STING signaling
PMID: 40923240
4
KDM4A contributes to cardiac fibrosis by promoting premature senescence in fibroblasts through Trim44-mediated autophagy suppression
PMID: 40231733
5
KDM4A inhibition induces DNA replication stress and activates tumor-intrinsic immunity in squamous cell carcinoma
PMID: 33743195
6
KDM4A regulates cholesterol synthesis and oxidative stress balance in bladder cancer
PMID: 39461328
7
KDM4A protein levels are posttranscriptionally elevated in AML samples with IDH1/2 mutations
PMID: 35895896
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.49Moderate
mathematical abilityOpen Targets
0.42Moderate
substance-related disorderOpen Targets
0.25Weak
intelligenceOpen Targets
0.23Weak
smoking initiationOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
breast cancerOpen Targets
0.10Weak
neoplasmOpen Targets
0.10Weak
nasopharyngeal carcinomaOpen Targets
0.10Suggestive
gliomaOpen Targets
0.09Suggestive
acute myeloid leukemiaOpen Targets
0.09Suggestive
schizophreniaOpen Targets
0.09Suggestive
cancerOpen Targets
0.09Suggestive
oral squamous cell carcinomaOpen Targets
0.08Suggestive
liver cancerOpen Targets
0.08Suggestive
handednessOpen Targets
0.08Suggestive
cervical cancerOpen Targets
0.08Suggestive
smoking cessationOpen Targets
0.08Suggestive
pachyonychia congenitaOpen Targets
0.08Suggestive
malignant pleural mesotheliomaOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H3-5Protein interaction100%TP53BP1Protein interaction100%H1-4Protein interaction99%H3-3BProtein interaction99%H3-4Protein interaction99%H3C1Protein interaction99%
Tissue Expression6 tissues
Brain
100%
Ovary
79%
Liver
74%
Lung
66%
Heart
39%
Bone Marrow
37%
Gene Interaction Network
Click a node to explore
KDM4AH3-5TP53BP1H1-4H3-3BH3-4H3C1
PROTEIN STRUCTURE
Preparing viewer…
PDB9GP4 · 1.59 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.26Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.18 [0.13–0.26]
RankingsWhere KDM4A stands among ~20K protein-coding genes
  • #3,412of 20,598
    Most Researched136 · top quartile
  • #827of 17,882
    Most Constrained (LOEUF)0.26 · top 5%
Genes detectedKDM4A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Proteomic and phosphoproteomic landscapes of acute myeloid leukemia.
PMID: 35895896
Blood · 2022
1.00
2
A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations.
PMID: 20371346
Cell · 2010
0.90
3
Targeting KDM4A epigenetically activates tumor-cell-intrinsic immunity by inducing DNA replication stress.
PMID: 33743195
Mol Cell · 2021
0.80
4
Inhibition of KDM4A restricts SQLE transcription and induces oxidative stress imbalance to suppress bladder cancer.
PMID: 39461328
Redox Biol · 2024
0.70
5
Inhibiting the Histone Demethylase Kdm4a Restrains Cardiac Fibrosis After Myocardial Infarction by Promoting Autophagy in Premature Senescent Fibroblasts.
PMID: 40231733
Adv Sci (Weinh) · 2025
0.60