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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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KMT5C
lysine methyltransferase 5C
Chromosome 19 · 19q13.42
NCBI Gene: 84787Ensembl: ENSG00000133247.14HGNC: HGNC:28405UniProt: A0A0D9SF94
35PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of double-strand break repair via nonhomologous end joiningS-adenosyl-L-methionine bindingDNA repairchromatin bindingneoplasmnon-small cell lung carcinomanonpapillary renal cell carcinomaposterior cortical atrophy
✦AI Summary

KMT5C is a histone methyltransferase that catalyzes di- and trimethylation of histone H4 lysine 20 (H4K20me2/3), playing critical roles in DNA repair, heterochromatin formation, and transcriptional regulation 1. The enzyme promotes DNA repair by interacting with RAD51 and facilitating homologous recombination repair complex formation, which depends on its methyltransferase activity 1. KMT5C also exhibits non-catalytic functions, including regulation of hepatic gluconeogenesis by preventing PGC-1α degradation through inhibition of E3 ligase RNF34 binding 2. In cancer contexts, KMT5C is significantly overexpressed and promotes tumor progression across multiple cancer types including hepatocellular carcinoma, non-small cell lung cancer, and clear cell renal cell carcinoma 134. The protein facilitates immune evasion by activating DNA repair responses that inhibit the STING-IRF3 pathway and reduce CD8+ T cell infiltration 3. Clinically, high KMT5C expression correlates with poor patient prognosis and reduced response to immunotherapy 3. KMT5C represents a promising therapeutic target, as both genetic and pharmacological inhibition (using inhibitor A196) sensitize cancer cells to PARP inhibitors and enhance immunotherapy efficacy 13.

Sources cited
1
KMT5C catalyzes H4K20 trimethylation, promotes DNA repair through RAD51 interaction, and its inhibition sensitizes liver cancer cells to PARP inhibitors
PMID: 37556368
2
KMT5C regulates hepatic gluconeogenesis through non-catalytic mechanisms by preventing PGC-1α degradation
PMID: 39929827
3
KMT5C promotes lung cancer progression and immune evasion by inhibiting STING-IRF3 pathway and reducing CD8+ T cell infiltration
PMID: 40126333
4
KMT5C is overexpressed in clear cell renal cell carcinoma and promotes proliferation and metastasis through aerobic glycolysis regulation
PMID: 38426605
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neoplasmOpen Targets
0.07Suggestive
non-small cell lung carcinomaOpen Targets
0.06Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.04Suggestive
posterior cortical atrophyOpen Targets
0.03Suggestive
cancerOpen Targets
0.02Suggestive
oral squamous cell carcinomaOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
SepsisOpen Targets
0.02Suggestive
obesityOpen Targets
0.01Suggestive
liver and intrahepatic bile duct neoplasmOpen Targets
0.01Suggestive
Neoplasm of the liverOpen Targets
0.01Suggestive
influenzaOpen Targets
0.01Suggestive
lung cancerOpen Targets
0.01Suggestive
viral diseaseOpen Targets
0.01Suggestive
liver cancerOpen Targets
0.01Suggestive
clear cell renal carcinomaOpen Targets
0.01Suggestive
heart diseaseOpen Targets
0.01Suggestive
renal cell carcinomaOpen Targets
0.00Suggestive
prostate cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
KMT5BShared pathway100%KMT5AProtein interaction100%EHMT2Protein interaction95%DNMT1Protein interaction93%H4C6Protein interaction91%H4C7Protein interaction91%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
60%
Lung
42%
Liver
41%
Brain
24%
Heart
19%
Gene Interaction Network
Click a node to explore
KMT5CKMT5BKMT5AEHMT2DNMT1H4C6H4C7
PROTEIN STRUCTURE
Preparing viewer…
PDB3RQ4 · 1.80 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.85LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.59 [0.41–0.85]
RankingsWhere KMT5C stands among ~20K protein-coding genes
  • #10,999of 20,598
    Most Researched35
  • #7,411of 17,882
    Most Constrained (LOEUF)0.85
Genes detectedKMT5C
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Autism genes converge on asynchronous development of shared neuron classes.
PMID: 35110736
Nature · 2022
1.00
2
Histone methyltransferase KMT5C drives liver cancer progression and directs therapeutic response to PARP inhibitors.
PMID: 37556368
Hepatology · 2024
0.90
3
Non-catalytic mechanisms of KMT5C regulating hepatic gluconeogenesis.
PMID: 39929827
Nat Commun · 2025
0.80
4
Targeting KMT5C Suppresses Lung Cancer Progression and Enhances the Efficacy of Immunotherapy.
PMID: 40126333
Adv Sci (Weinh) · 2025
0.70
5
Insight into the mechanisms and dysregulation of KMT5C-H4K20me3 in cancer.
PMID: 41108066
Epigenetics · 2025
0.60