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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LBX1
ladybird homeobox 1
Chromosome 10 · 10q24.32
NCBI Gene: 10660Ensembl: ENSG00000138136.8HGNC: HGNC:16960UniProt: P52954
34PubMed Papers
21Diseases
0Drugs
1Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingDNA-binding transcription factor activity, RNA polymerase II-specificsequence-specific double-stranded DNA bindingregulation of transcription by RNA polymerase IIcentral hypoventilation syndrome, congenital, 1, with or without Hirschsprung diseasecentral hypoventilation syndrome, congenitalOndine syndromescoliosis
✦AI Summary

LBX1 is a homeobox transcription factor with critical roles in neuronal development and skeletal patterning 1. Mechanistically, LBX1 functions as a sequence-specific DNA-binding transcription factor regulating RNA polymerase II-dependent gene expression. Primary developmental functions include specifying GABAergic interneurons in the dorsal spinal cord and directing migration of hypaxial muscle precursor cells for limb, diaphragm, and hypoglossal development 1. LBX1 also drives pain coping responses through spinal neurons coexpressing TAC1, distinct from reflexive pain withdrawal 2. Critically, LBX1 cooperates with PHOX2B transcription factor in developing retrotrapezoid nucleus (RTN) neurons essential for respiratory chemoreflexes 34. Mutations in LBX1 cause congenital central hypoventilation syndrome (CCHS), a life-threatening respiratory disorder characterized by inadequate breathing and diminished CO₂ responsiveness 45. A frameshift LBX1 mutation selectively impairs cooperation with PHOX2B while preserving DNA-binding capability, demonstrating context-dependent dysfunction 4. Beyond respiratory disease, LBX1 polymorphisms (rs111090870, rs678741, rs625039) are strongly associated with adolescent idiopathic scoliosis across Asian and Caucasian populations 678, implicating LBX1 in vertebral development. These findings establish LBX1 as a pleiotropic developmental regulator with major clinical relevance in respiratory and skeletal diseases.

Sources cited
1
LBX1 is a homeobox transcription factor with expression during embryogenesis in CNS and developing muscles, particularly dorsal spinal cord and hindbrain
PMID: 8645601
2
LBX1 is a transcription factor required for retrotrapezoid nucleus (RTN) development, which is essential for central respiratory chemoreflexes
PMID: 35965033
3
Spinal neurons marked by TAC1 and LBX1 coexpression drive pain coping responses distinct from reflexive withdrawal
PMID: 30532001
4
LBX1 frameshift mutation causes congenital central hypoventilation by selectively impairing cooperation with PHOX2B in RTN neuron development
PMID: 30487221
5
LBX1 mutations correlate with congenital central hypoventilation characterized by hypoventilation, central apnea, and diminished chemoreflexes
PMID: 38896627
6
LBX1 gene polymorphisms rs111090870, rs678741, and rs625039 are associated with adolescent idiopathic scoliosis susceptibility across populations
PMID: 27450593
7
LBX1 variant rs11190870 shows highly significant association with idiopathic scoliosis, confirmed as a susceptibility gene
PMID: 25987191
8
LBX1 region is established as major susceptibility locus for adolescent idiopathic scoliosis in Asian and non-Hispanic white populations
PMID: 24721834
Disease Associationsⓘ21
central hypoventilation syndrome, congenitalOpen Targets
0.37Weak
central hypoventilation syndrome, congenital, 1, with or without Hirschsprung diseaseOpen Targets
0.37Weak
Ondine syndromeOpen Targets
0.37Weak
scoliosisOpen Targets
0.35Weak
adolescent idiopathic scoliosisOpen Targets
0.35Weak
Abnormality of the skeletal systemOpen Targets
0.30Weak
uterine fibroidOpen Targets
0.28Weak
central hypoventilation syndrome, congenital, 3Open Targets
0.27Weak
MenorrhagiaOpen Targets
0.23Weak
oral squamous cell carcinomaOpen Targets
0.08Suggestive
Åland Islands eye diseaseOpen Targets
0.07Suggestive
craniofacial conodysplasiaOpen Targets
0.05Suggestive
hereditary neuropathy with liability to pressure palsiesOpen Targets
0.05Suggestive
ovarian dysfunctionOpen Targets
0.04Suggestive
atrial fibrillationOpen Targets
0.04Suggestive
familial primary pulmonary hypoplasiaOpen Targets
0.04Suggestive
Autosomal recessive spastic paraplegia type 25Open Targets
0.04Suggestive
hereditary spastic paraplegia 25Open Targets
0.04Suggestive
neural tube defects, folate-sensitiveOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.04Suggestive
Central hypoventilation syndrome, congenital, 3UniProt
Pathogenic Variants1
NM_006562.5(LBX1):c.707del (p.Val236fs)Likely pathogenic
Central hypoventilation syndrome, congenital, 3
★☆☆☆2025→ Residue 236
View on ClinVar ↗
Related Genes
CST6Shared pathway100%GSC2Shared pathway100%HOXC13Shared pathway100%SCML2Shared pathway100%SKOR1Protein interaction89%FBXW4Protein interaction82%
Tissue Expression6 tissues
Lung
100%
Brain
18%
Heart
0%
Bone Marrow
0%
Ovary
0%
Liver
0%
Gene Interaction Network
Click a node to explore
LBX1CST6GSC2HOXC13SCML2SKOR1FBXW4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P52954
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.75LoF Tolerant
pLIⓘ
0.45Tolerant
Observed/Expected LoF0.38 [0.21–0.75]
RankingsWhere LBX1 stands among ~20K protein-coding genes
  • #11,179of 20,598
    Most Researched34
  • #5,227of 5,498
    Most Pathogenic Variants1
  • #5,992of 17,882
    Most Constrained (LOEUF)0.75
Genes detectedLBX1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Central respiratory chemoreception.
PMID: 35965033
Handb Clin Neurol · 2022
1.00
2
Associations of LBX1 gene and adolescent idiopathic scoliosis susceptibility: a meta-analysis based on 34,626 subjects.
PMID: 27450593
BMC Musculoskelet Disord · 2016
0.90
3
Identifying the pathways required for coping behaviours associated with sustained pain.
PMID: 30532001
Nature · 2019
0.80
4
Mouse Lbx1 and human LBX1 define a novel mammalian homeobox gene family related to the Drosophila lady bird genes.
PMID: 8645601
Mech Dev · 1995
0.70
5
Candidate gene analysis and exome sequencing confirm LBX1 as a susceptibility gene for idiopathic scoliosis.
PMID: 25987191
Spine J · 2015
0.60