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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LCE3A
late cornified envelope 3A
Chromosome 1 · 1q21.3
NCBI Gene: 353142Ensembl: ENSG00000185962.1HGNC: HGNC:29461UniProt: Q5TA76
16PubMed Papers
19Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingkilling of cells of another organismdefense response to Gram-negative bacteriumdefense response to Gram-positive bacteriumpsoriasisatopic eczematype 2 diabetes mellitusankylosing spondylitis
✦AI Summary

LCE3A is a structural protein of the stratum corneum that functions as an antimicrobial component of innate cutaneous host defense 1. The protein possesses defensin-like antimicrobial activity against a broad spectrum of Gram-positive and Gram-negative bacteria at low micromolar concentrations 1. LCE3A expression is upregulated in individuals carrying the psoriasis-associated LCE3B/C deletion, a compensatory response that may partially mitigate the loss of these adjacent genes 1. The expression of LCE3A is regulated through STAT3-dependent signaling at an enhancer region, with this regulation showing epistatic interaction with the major psoriasis risk allele HLA-Cw6 2. In vivo, LCE3A contributes to shaping cutaneous and oral microbiota composition; genetic variations affecting LCE3A expression correlate with altered microbiota diversity 3. Upon inflammation, LCE3A may regulate skin barrier repair by modulating bacterial colonization and immune responses to bacterial antigens 1. LCE3A expression can be therapeutically induced through vitamin D receptor ligands including 1,25-dihydroxyvitamin D3, curcumin, and docosahexaenoic acid, suggesting a mechanism for psoriasis treatment 4 5. Genetic variants near LCE3A show stronger association with cutaneous-only psoriasis than psoriatic arthritis 6.

Sources cited
1
LCE3A has defensin-like antimicrobial activity against bacteria; LCE3B/C-del increases LCE3A expression; LCE3A regulates skin barrier repair via microbiota shaping and immune response
PMID: 28634035
2
LCE3A possesses antimicrobial activity but does not regulate epidermal barrier integrity
PMID: 29055413
3
LCE3A expression is regulated by STAT3-binding to an enhancer region; shows epistatic interaction with HLA-Cw6
PMID: 34029573
4
LCE3A antimicrobial activity depends on amino acid content; LCE3B/C-del correlates with altered skin and oral microbiota beta-diversity
PMID: 34942199
5
1,25-dihydroxyvitamin D3 and delphinidin upregulate LCE3A expression via VDR/VDRE-dependent mechanisms
PMID: 23839497
6
Dietary VDR ligands DHA and curcumin induce LCE3A protein expression and modulate inflammatory signaling in keratinocytes
PMID: 29401702
7
Genetic variant near LCE3A shows stronger association with cutaneous psoriasis than psoriatic arthritis
PMID: 26626624
Disease Associationsⓘ19
psoriasisOpen Targets
0.13Weak
atopic eczemaOpen Targets
0.09Suggestive
type 2 diabetes mellitusOpen Targets
0.07Suggestive
ankylosing spondylitisOpen Targets
0.06Suggestive
sebaceous of Jadassohn nevusOpen Targets
0.05Suggestive
actinic keratosisOpen Targets
0.05Suggestive
skin diseaseOpen Targets
0.05Suggestive
squamous cell carcinomaOpen Targets
0.05Suggestive
Crohn's diseaseOpen Targets
0.05Suggestive
psoriasis vulgarisOpen Targets
0.05Suggestive
sclerosing cholangitisOpen Targets
0.05Suggestive
ulcerative colitisOpen Targets
0.05Suggestive
esophageal adenocarcinomaOpen Targets
0.04Suggestive
cutaneous lupus erythematosusOpen Targets
0.00Suggestive
psoriatic arthritisOpen Targets
0.00Suggestive
pancreatic serous cystadenomaOpen Targets
0.00Suggestive
diabetes mellitusOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
infectionOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LCE6AProtein interaction88%LCE3CProtein interaction87%LCE3BProtein interaction77%SPRR2BProtein interaction76%SPRR2GProtein interaction76%LCE2BProtein interaction76%
Tissue Expression6 tissues
Heart
0%
Lung
0%
Brain
0%
Ovary
0%
Bone Marrow
0%
Liver
0%
Gene Interaction Network
Click a node to explore
LCE3ALCE6ALCE3CLCE3BSPRR2BSPRR2GLCE2B
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q5TA76
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.86LoF Tolerant
pLIⓘ
0.33Tolerant
Observed/Expected LoF0.00 [0.00–1.86]
RankingsWhere LCE3A stands among ~20K protein-coding genes
  • #15,299of 20,598
    Most Researched16
  • #16,913of 17,882
    Most Constrained (LOEUF)1.86
Genes detectedLCE3A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Psoriasis-Associated Late Cornified Envelope (LCE) Proteins Have Antibacterial Activity.
PMID: 28634035
J Invest Dermatol · 2017
1.00
2
Pushing the Envelope in Psoriasis: Late Cornified Envelope Proteins Possess Antimicrobial Activity.
PMID: 29055413
J Invest Dermatol · 2017
0.90
3
Functional Mapping of Genetic Interactions between HLA-Cw6 and LCE3A in Psoriasis.
PMID: 34029573
J Invest Dermatol · 2021
0.80
4
Antimicrobial Late Cornified Envelope Proteins: The Psoriasis Risk Factor Deletion of LCE3B/C Genes Affects Microbiota Composition.
PMID: 34942199
J Invest Dermatol · 2022
0.70
5
The exploration of new biomarkers for oral cancer through the ceRNA network and immune microenvironment analysis.
PMID: 36626444
Medicine (Baltimore) · 2022
0.60