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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
Chromosome 6 · 6p21.33
NCBI Gene: 57819Ensembl: ENSG00000172850.11HGNC: HGNC:13940UniProt: Q9Y333
104PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
spliceosomal tri-snRNP complex assemblymRNA catabolic processRNA bindingprotein binding
✦AI Summary

LSM2 is an RNA-binding protein that functions in two distinct cellular compartments through association with different heptameric Lsm complexes. In the nucleus, LSM2 is a component of the U4/U6-U5 tri-snRNP complex and precatalytic spliceosome (B complex), where it binds the 3'-terminal U-tract of U6 snRNA to facilitate pre-mRNA splicing 1. The nuclear Pat1b/Lsm2-8 complex also regulates alternative splicing by modulating exon inclusion patterns 2. In the cytoplasm, LSM2 participates in mRNA decay pathways through the Lsm1-7-Pat1 complex and P-body functions 3. Clinically, LSM2 dysregulation is associated with multiple malignancies. Elevated LSM2 expression correlates with poor prognosis and aggressive phenotypes in hepatocellular carcinoma, skin cutaneous melanoma, and is a novel susceptibility gene for Hodgkin lymphoma 456. In non-malignant disease, LSM2 is critical for club cell proliferation in the lung; its inhibition exacerbates cigarette smoke-induced injury and accelerates COPD progression 7. LSM2 has been implicated in immune function as an MHC Class III-encoded RNA-binding protein associated with autoimmune diseases 8. These findings position LSM2 as a multifunctional regulator of RNA metabolism with significant therapeutic potential across diverse pathologies.

Sources cited
1
LSM2 is a component of the U4/U6-U5 tri-snRNP complex and precatalytic spliceosome involved in pre-mRNA splicing
PMID: 28781166
2
LSM2 associates with Pat1b in nuclear Lsm2-8 complex that binds U6 snRNA and regulates alternative splicing
PMID: 28768202
3
LSM2 participates in cytoplasmic mRNA decay via Lsm1-7-Pat1 complex and P-body functions
PMID: 31231973
4
LSM2 is highly expressed in hepatocellular carcinoma and associated with poor survival; knockdown inhibits proliferation, migration, and invasion
PMID: 37612479
5
LSM2 is highly expressed in skin cutaneous melanoma and associated with poor prognosis and early recurrence; knockdown inhibits cell proliferation, migration, and invasion
PMID: 37312186
6
LSM2 is identified as a novel susceptibility gene for Hodgkin lymphoma through transcriptome-wide association study
PMID: 40392315
7
LSM2 is critical for club cell proliferation; its knockout exacerbates cigarette smoke-induced lung injury and accelerates COPD progression
PMID: 40022153
8
LSM2 is an MHC Class III-encoded RNA-binding protein with roles in post-transcriptional gene regulation and associated with autoimmune diseases
PMID: 33280511
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CLNS1AProtein interaction100%DDX6Protein interaction100%SNRNP70Protein interaction100%SART3Protein interaction100%SNRNP27Protein interaction100%EDC4Protein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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LSM2CLNS1ADDX6SNRNP70SART3SNRNP27EDC4
PROTEIN STRUCTURE
Preparing viewer…
PDB8H6L · 2.60 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.13LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.70 [0.45–1.13]
RankingsWhere LSM2 stands among ~20K protein-coding genes
  • #4,593of 20,598
    Most Researched104 · top quartile
  • #11,680of 17,882
    Most Constrained (LOEUF)1.13
Genes detectedLSM2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Lsm2 is critical to club cell proliferation and its inhibition aggravates COPD progression.
PMID: 40022153
Respir Res · 2025
1.00
2
The mechanism of LSM2 in the progression of live hepatocellular carcinoma was analyzed based on bioinformatics.
PMID: 37612479
Med Oncol · 2023
0.90
3
LSM2 is associated with a poor prognosis and promotes cell proliferation, migration, and invasion in skin cutaneous melanoma.
PMID: 37312186
BMC Med Genomics · 2023
0.80
4
Pat1 RNA-binding proteins: Multitasking shuttling proteins.
PMID: 31231973
Wiley Interdiscip Rev RNA · 2019
0.70
5
Expression profile and prognostic values of LSM family in skin cutaneous melanoma.
PMID: 36371223
BMC Med Genomics · 2022
0.60