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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LY96
lymphocyte antigen 96
Chromosome 8 · 8q21.11
NCBI Gene: 23643Ensembl: ENSG00000154589.8HGNC: HGNC:17156UniProt: Q9Y6Y9
148PubMed Papers
20Diseases
2Drugs
0Pathogenic Variants
CLINICAL
Clinical Trials
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
toll-like receptor signaling pathwaylipopolysaccharide receptor complexlipopolysaccharide immune receptor activityprotein bindingdengue diseaseinborn error of immunityneurodegenerative diseaseSepsis
✦AI Summary

LY96 is a transmembrane glycoprotein that functions as a critical co-receptor in innate immune signaling. Its primary role is binding bacterial lipopolysaccharide (LPS) and cooperating with TLR4 to initiate immune responses against Gram-negative bacteria 12. LY96 also cooperates with TLR2 in detecting cell wall components from both Gram-positive and Gram-negative bacteria 3. Mechanistically, LY96 enhances TLR4-dependent NF-κB activation, and cells require both LY96 and TLR4 expression to mount effective LPS-induced immune responses 4. Beyond canonical immunology, LY96 demonstrates broad disease relevance. Pan-cancer analysis reveals LY96 upregulation in most cancer types with prognostic significance, correlating with tumor mutation burden, microsatellite instability, and immune infiltration patterns 5. LY96 serves as a shared diagnostic biomarker in inflammatory conditions including psoriatic arthritis, rheumatoid arthritis 6, diabetic nephropathy 7, systemic lupus erythematosus, and periodontal disease 8. In osteoarthritis, the CD14/TLR4/LY96 pathway regulates macrophage polarization and inflammation 9. Notably, in mesenchymal glioblastoma, LY96 promotes stem cell maintenance through autocrine signaling and drives macrophage polarization toward a tumor-promoting state through paracrine mechanisms 10. Clinically, LY96 represents a potential therapeutic target across multiple disease contexts, with modulation of LY96 signaling showing promise in reducing inflammation and improving outcomes in cancer, autoimmune, and degenerative diseases.

Sources cited
1
LY96 binds bacterial lipopolysaccharide
PMID: 17569869
2
LY96 binds bacterial lipopolysaccharide
PMID: 17803912
3
LY96 cooperates with TLR4 in response to LPS and with TLR2 in response to bacterial cell wall components
PMID: 11160242
4
LY96 cooperates with TLR2 in innate immune response
PMID: 11593030
5
LY96 enhances TLR4-dependent NF-κB activation and is required with TLR4 for LPS response
PMID: 10359581
6
LY96 is upregulated in most cancer types with prognostic significance and correlates with tumor mutation burden and immune infiltration
PMID: 35647025
7
LY96 is a shared diagnostic marker for psoriatic arthritis and rheumatoid arthritis associated with immune cell function
PMID: 39509434
8
CD14/TLR4/LY96 pathway regulates macrophage polarization and inflammation in osteoarthritis
PMID: 40541821
9
LY96 promotes glioblastoma stem cell maintenance and drives macrophage polarization toward mesenchymal state
PMID: 41802535
10
LY96 is a biomarker identified in diabetic nephropathy with immune infiltration associations
PMID: 41479901
11
LY96 is a shared diagnostic marker for systemic lupus erythematosus and periodontal disease
PMID: 40766309
Disease Associationsⓘ20
dengue diseaseOpen Targets
0.37Weak
inborn error of immunityOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.34Weak
SepsisOpen Targets
0.33Weak
smoking initiationOpen Targets
0.31Weak
device complicationOpen Targets
0.24Weak
cryopyrin-associated periodic syndromeOpen Targets
0.09Suggestive
HypercholesterolemiaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
muscle crampOpen Targets
0.09Suggestive
cancerOpen Targets
0.08Suggestive
necrotizing enterocolitisOpen Targets
0.08Suggestive
oral mucosa leukoplakiaOpen Targets
0.08Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.08Suggestive
preeclampsiaOpen Targets
0.08Suggestive
gliomaOpen Targets
0.08Suggestive
colon carcinomaOpen Targets
0.07Suggestive
asthmaOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
isolated agammaglobulinemiaOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets2
ERITORANPhase III
Toll-like receptor 4/MD-2 antagonist
Sepsis
ERITORAN TETRASODIUMPhase III
Toll-like receptor 4/MD-2 antagonist
Sepsis
Related Genes
TNFProtein interaction100%CD36Protein interaction100%BGNProtein interaction100%HSPD1Protein interaction100%S100A8Protein interaction100%S100A9Protein interaction100%
Tissue Expression6 tissues
Lung
100%
Ovary
72%
Bone Marrow
55%
Brain
31%
Heart
28%
Liver
27%
Gene Interaction Network
Click a node to explore
LY96TNFCD36BGNHSPD1S100A8S100A9
PROTEIN STRUCTURE
Preparing viewer…
PDB2E56 · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.94LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.59 [0.73–1.94]
RankingsWhere LY96 stands among ~20K protein-coding genes
  • #3,068of 20,598
    Most Researched148 · top quartile
  • #17,550of 17,882
    Most Constrained (LOEUF)1.94
Genes detectedLY96
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Pan-Cancer Analysis of the Characteristics of LY96 in Prognosis and Immunotherapy Across Human Cancer.
PMID: 35647025
Front Mol Biosci · 2022
1.00
2
THP-1 cells increase TNF-α production upon LPS + soluble human IgG co-stimulation supporting evidence for TLR4 and Fcγ receptors crosstalk.
PMID: 32702524
Cell Immunol · 2020
0.90
3
Cycloastragenol reduces inflammation in CLP-induced septic MICE by suppressing TLR4 signaling pathways.
PMID: 40319834
Phytomedicine · 2025
0.80
4
The shared biomarkers and immune landscape in psoriatic arthritis and rheumatoid arthritis: Findings based on bioinformatics, machine learning and single-cell analysis.
PMID: 39509434
PLoS One · 2024
0.70
5
Emapunil relieves osteoarthritis by regulating the CD14/TLR4/LY96 pathway in synovial macrophages through translocator protein 18 kDa.
PMID: 40541821
Osteoarthritis Cartilage · 2025
0.60